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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 | Package: BSgenome
Title: Infrastructure for Biostrings-based genome data packages and
support for efficient SNP representation
Description: Infrastructure shared by all the Biostrings-based genome data
packages
Version: 1.42.0
Encoding: UTF-8
Author: Hervé Pagès
Maintainer: H. Pagès <hpages@fredhutch.org>
biocViews: Genetics, Infrastructure, DataRepresentation,
SequenceMatching, Annotation, SNP
Depends: R (>= 2.8.0), methods, BiocGenerics (>= 0.13.8), S4Vectors (>=
0.9.36), IRanges (>= 2.1.33), GenomeInfoDb (>= 1.3.19),
GenomicRanges (>= 1.23.15), Biostrings (>= 2.35.3), rtracklayer
(>= 1.25.8)
Imports: methods, utils, stats, BiocGenerics, S4Vectors, IRanges,
XVector, GenomeInfoDb, GenomicRanges, Biostrings, Rsamtools,
rtracklayer
Suggests: BiocInstaller, Biobase, BSgenome.Celegans.UCSC.ce2,
BSgenome.Hsapiens.UCSC.hg38,
BSgenome.Hsapiens.UCSC.hg38.masked,
BSgenome.Mmusculus.UCSC.mm10, BSgenome.Rnorvegicus.UCSC.rn5,
TxDb.Hsapiens.UCSC.hg38.knownGene,
TxDb.Mmusculus.UCSC.mm10.knownGene,
SNPlocs.Hsapiens.dbSNP141.GRCh38,
XtraSNPlocs.Hsapiens.dbSNP141.GRCh38, hgu95av2probe, RUnit
License: Artistic-2.0
LazyLoad: yes
Collate: utils.R OnDiskLongTable-class.R OnDiskNamedSequences-class.R
SNPlocs-class.R InjectSNPsHandler-class.R XtraSNPlocs-class.R
BSgenome-class.R available.genomes.R injectSNPs.R
getSeq-methods.R bsapply.R BSgenomeViews-class.R
BSgenome-utils.R export-methods.R BSgenomeForge.R
NeedsCompilation: no
Packaged: 2016-10-17 22:15:58 UTC; biocbuild
Built: R 3.3.2; ; 'Thu, 27 Oct 2016 13:47:45 +0200'; unix
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