This file is indexed.

/usr/lib/R/site-library/AnnotationHub/DESCRIPTION is in r-bioc-annotationhub 2.6.4-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
Package: AnnotationHub
Type: Package
Title: Client to access AnnotationHub resources
Version: 2.6.4
Authors@R: 
    c(person("Martin", "Morgan", email="martin.morgan@roswellpark.org",
             role="cre"),
      person("Marc", "Carlson", role="ctb"),
      person("Dan", "Tenenbaum", role="ctb"),
      person("Sonali", "Arora", role="ctb"))
biocViews: Infrastructure, DataImport, GUI, ThirdPartyClient
Maintainer: Bioconductor Package Maintainer <maintainer@bioconductor.org>
Description: This package provides a client for the Bioconductor
    AnnotationHub web resource. The AnnotationHub web resource
    provides a central location where genomic files (e.g., VCF, bed,
    wig) and other resources from standard locations (e.g., UCSC,
    Ensembl) can be discovered. The resource includes metadata about
    each resource, e.g., a textual description, tags, and date of
    modification. The client creates and manages a local cache of
    files retrieved by the user, helping with quick and reproducible
    access.
License: Artistic-2.0
Depends: BiocGenerics (>= 0.15.10)
Imports: utils, methods, grDevices, RSQLite, BiocInstaller,
        AnnotationDbi, S4Vectors, interactiveDisplayBase, httr, yaml
Suggests: IRanges, GenomicRanges, GenomeInfoDb, VariantAnnotation,
        Rsamtools, rtracklayer, BiocStyle, knitr, AnnotationForge,
        rBiopaxParser, RUnit, GenomicFeatures, MSnbase, mzR,
        Biostrings, SummarizedExperiment
Enhances: AnnotationHubData
Collate: AnnotationHubOption.R AllGenerics.R Hub-class.R db-utils.R
        AnnotationHub-class.R AnnotationHubResource-class.R
        BEDResource-class.R ProteomicsResource-class.R
        EpigenomeResource-class.R GenomicScoresResource-class.R
        utilities.R sql-utils.R Hub-utils.R cache-utils.R zzz.R
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2016-11-24 00:16:22 UTC; biocbuild
Author: Martin Morgan [cre],
  Marc Carlson [ctb],
  Dan Tenenbaum [ctb],
  Sonali Arora [ctb]
Built: R 3.3.2; ; 'Wed, 30 Nov 2016 10:43:21 +0100'; unix