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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 | Package: AnnotationHub
Type: Package
Title: Client to access AnnotationHub resources
Version: 2.6.4
Authors@R:
c(person("Martin", "Morgan", email="martin.morgan@roswellpark.org",
role="cre"),
person("Marc", "Carlson", role="ctb"),
person("Dan", "Tenenbaum", role="ctb"),
person("Sonali", "Arora", role="ctb"))
biocViews: Infrastructure, DataImport, GUI, ThirdPartyClient
Maintainer: Bioconductor Package Maintainer <maintainer@bioconductor.org>
Description: This package provides a client for the Bioconductor
AnnotationHub web resource. The AnnotationHub web resource
provides a central location where genomic files (e.g., VCF, bed,
wig) and other resources from standard locations (e.g., UCSC,
Ensembl) can be discovered. The resource includes metadata about
each resource, e.g., a textual description, tags, and date of
modification. The client creates and manages a local cache of
files retrieved by the user, helping with quick and reproducible
access.
License: Artistic-2.0
Depends: BiocGenerics (>= 0.15.10)
Imports: utils, methods, grDevices, RSQLite, BiocInstaller,
AnnotationDbi, S4Vectors, interactiveDisplayBase, httr, yaml
Suggests: IRanges, GenomicRanges, GenomeInfoDb, VariantAnnotation,
Rsamtools, rtracklayer, BiocStyle, knitr, AnnotationForge,
rBiopaxParser, RUnit, GenomicFeatures, MSnbase, mzR,
Biostrings, SummarizedExperiment
Enhances: AnnotationHubData
Collate: AnnotationHubOption.R AllGenerics.R Hub-class.R db-utils.R
AnnotationHub-class.R AnnotationHubResource-class.R
BEDResource-class.R ProteomicsResource-class.R
EpigenomeResource-class.R GenomicScoresResource-class.R
utilities.R sql-utils.R Hub-utils.R cache-utils.R zzz.R
VignetteBuilder: knitr
NeedsCompilation: yes
Packaged: 2016-11-24 00:16:22 UTC; biocbuild
Author: Martin Morgan [cre],
Marc Carlson [ctb],
Dan Tenenbaum [ctb],
Sonali Arora [ctb]
Built: R 3.3.2; ; 'Wed, 30 Nov 2016 10:43:21 +0100'; unix
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