/usr/lib/python2.7/dist-packages/whoosh/columns.py is in python-whoosh 2.7.0-2.
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1222 1223 1224 1225 1226 1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237 1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251 1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265 1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279 1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293 1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307 1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321 1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335 1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349 1350 1351 1352 1353 1354 1355 1356 1357 1358 1359 1360 1361 1362 1363 1364 1365 1366 1367 1368 1369 1370 1371 1372 1373 1374 1375 1376 1377 1378 1379 1380 1381 1382 1383 1384 1385 1386 1387 1388 1389 1390 1391 1392 1393 1394 1395 1396 1397 1398 1399 1400 1401 1402 1403 1404 1405 1406 1407 1408 1409 1410 1411 | # Copyright 2012 Matt Chaput. All rights reserved.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
#
# 1. Redistributions of source code must retain the above copyright notice,
# this list of conditions and the following disclaimer.
#
# 2. Redistributions in binary form must reproduce the above copyright
# notice, this list of conditions and the following disclaimer in the
# documentation and/or other materials provided with the distribution.
#
# THIS SOFTWARE IS PROVIDED BY MATT CHAPUT ``AS IS'' AND ANY EXPRESS OR
# IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
# MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO
# EVENT SHALL MATT CHAPUT OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
# INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT
# LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA,
# OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
# LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
# NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE,
# EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
#
# The views and conclusions contained in the software and documentation are
# those of the authors and should not be interpreted as representing official
# policies, either expressed or implied, of Matt Chaput.
"""
The API and implementation of columns may change in the next version of Whoosh!
This module contains "Column" objects which you can use as the argument to a
Field object's ``sortable=`` keyword argument. Each field defines a default
column type for when the user specifies ``sortable=True`` (the object returned
by the field's ``default_column()`` method).
The default column type for most fields is ``VarBytesColumn``,
although numeric and date fields use ``NumericColumn``. Expert users may use
other field types that may be faster or more storage efficient based on the
field contents. For example, if a field always contains one of a limited number
of possible values, a ``RefBytesColumn`` will save space by only storing the
values once. If a field's values are always a fixed length, the
``FixedBytesColumn`` saves space by not storing the length of each value.
A ``Column`` object basically exists to store configuration information and
provides two important methods: ``writer()`` to return a ``ColumnWriter`` object
and ``reader()`` to return a ``ColumnReader`` object.
"""
from __future__ import division, with_statement
import struct, warnings
from array import array
from bisect import bisect_right
try:
import zlib
except ImportError:
zlib = None
from whoosh.compat import b, bytes_type, BytesIO
from whoosh.compat import array_tobytes, xrange
from whoosh.compat import dumps, loads
from whoosh.filedb.structfile import StructFile
from whoosh.idsets import BitSet, OnDiskBitSet
from whoosh.system import emptybytes
from whoosh.util.cache import lru_cache
from whoosh.util.numeric import typecode_max, typecode_min
from whoosh.util.numlists import GrowableArray
from whoosh.util.varints import varint
# Utility functions
def _mintype(maxn):
if maxn < 2 ** 8:
typecode = "B"
elif maxn < 2 ** 16:
typecode = "H"
elif maxn < 2 ** 31:
typecode = "i"
else:
typecode = "I"
return typecode
# Python does not support arrays of long long see Issue 1172711
# These functions help write/read a simulated an array of q/Q using lists
def write_qsafe_array(typecode, arry, dbfile):
if typecode == "q":
for num in arry:
dbfile.write_long(num)
elif typecode == "Q":
for num in arry:
dbfile.write_ulong(num)
else:
dbfile.write_array(arry)
def read_qsafe_array(typecode, size, dbfile):
if typecode == "q":
arry = [dbfile.read_long() for _ in xrange(size)]
elif typecode == "Q":
arry = [dbfile.read_ulong() for _ in xrange(size)]
else:
arry = dbfile.read_array(typecode, size)
return arry
def make_array(typecode, size=0, default=None):
if typecode.lower() == "q":
# Python does not support arrays of long long see Issue 1172711
if default is not None and size:
arry = [default] * size
else:
arry = []
else:
if default is not None and size:
arry = array(typecode, (default for _ in xrange(size)))
else:
arry = array(typecode)
return arry
# Base classes
class Column(object):
"""Represents a "column" of rows mapping docnums to document values.
The interface requires that you store the start offset of the column, the
length of the column data, and the number of documents (rows) separately,
and pass them to the reader object.
"""
reversible = False
def writer(self, dbfile):
"""Returns a :class:`ColumnWriter` object you can use to use to create
a column of this type on disk.
:param dbfile: the :class:`~whoosh.filedb.structfile.StructFile` to
write to.
"""
return self.Writer(dbfile)
def reader(self, dbfile, basepos, length, doccount):
"""Returns a :class:`ColumnReader` object you can use to read a column
of this type from disk.
:param dbfile: the :class:`~whoosh.filedb.structfile.StructFile` to
read from.
:param basepos: the offset within the file at which the column starts.
:param length: the length in bytes of the column occupies in the file.
:param doccount: the number of rows (documents) in the column.
"""
return self.Reader(dbfile, basepos, length, doccount)
def default_value(self, reverse=False):
"""Returns the default value for this column type.
"""
return self._default
def stores_lists(self):
"""Returns True if the column stores a list of values for each document
instead of a single value.
"""
return False
class ColumnWriter(object):
def __init__(self, dbfile):
self._dbfile = dbfile
self._count = 0
def fill(self, docnum):
write = self._dbfile.write
default = self._defaultbytes
if docnum > self._count:
for _ in xrange(docnum - self._count):
write(default)
def add(self, docnum, value):
raise NotImplementedError
def finish(self, docnum):
pass
class ColumnReader(object):
def __init__(self, dbfile, basepos, length, doccount):
self._dbfile = dbfile
self._basepos = basepos
self._length = length
self._doccount = doccount
def __len__(self):
return self._doccount
def __getitem__(self, docnum):
raise NotImplementedError
def sort_key(self, docnum):
return self[docnum]
def __iter__(self):
for i in xrange(self._doccount):
yield self[i]
def load(self):
return list(self)
def set_reverse(self):
raise NotImplementedError
# Arbitrary bytes column
class VarBytesColumn(Column):
"""Stores variable length byte strings. See also :class:`RefBytesColumn`.
The current implementation limits the total length of all document values
a segment to 2 GB.
The default value (the value returned for a document that didn't have a
value assigned to it at indexing time) is an empty bytestring (``b''``).
"""
_default = emptybytes
class Writer(ColumnWriter):
def __init__(self, dbfile):
assert isinstance(dbfile, StructFile)
self._dbfile = dbfile
self._count = 0
self._lengths = GrowableArray(allow_longs=False)
def __repr__(self):
return "<VarBytes.Writer>"
def fill(self, docnum):
if docnum > self._count:
self._lengths.extend(0 for _ in xrange(docnum - self._count))
def add(self, docnum, v):
self.fill(docnum)
self._dbfile.write(v)
self._lengths.append(len(v))
self._count = docnum + 1
def finish(self, doccount):
self.fill(doccount)
lengths = self._lengths.array
self._dbfile.write_array(lengths)
# Write the typecode for the lengths
self._dbfile.write_byte(ord(lengths.typecode))
class Reader(ColumnReader):
def __init__(self, dbfile, basepos, length, doccount):
self._dbfile = dbfile
self._basepos = basepos
self._length = length
self._doccount = doccount
self._read_lengths()
# Create an array of offsets into the strings using the lengths
offsets = array("L", (0,))
for length in self._lengths:
offsets.append(offsets[-1] + length)
self._offsets = offsets
def __repr__(self):
return "<VarBytes.Reader>"
def _read_lengths(self):
dbfile = self._dbfile
basepos = self._basepos
length = self._length
doccount = self._doccount
# The end of the lengths array is the end of the data minus the
# typecode byte
endoflens = basepos + length - 1
# Load the length typecode from before the key length
typecode = chr(dbfile.get_byte(endoflens))
# Load the length array from before the typecode
itemsize = struct.calcsize(typecode)
lengthsbase = endoflens - (itemsize * doccount)
self._lengths = dbfile.get_array(lengthsbase, typecode, doccount)
@lru_cache()
def __getitem__(self, docnum):
length = self._lengths[docnum]
if not length:
return emptybytes
offset = self._offsets[docnum]
return self._dbfile.get(self._basepos + offset, length)
def __iter__(self):
get = self._dbfile.get
pos = self._basepos
for length in self._lengths:
yield get(pos, length)
pos += length
class FixedBytesColumn(Column):
"""Stores fixed-length byte strings.
"""
def __init__(self, fixedlen, default=None):
"""
:param fixedlen: the fixed length of byte strings in this column.
:param default: the default value to use for documents that don't
specify a value. If you don't specify a default, the column will
use ``b'\\x00' * fixedlen``.
"""
self._fixedlen = fixedlen
if default is None:
default = b("\x00") * fixedlen
elif len(default) != fixedlen:
raise ValueError
self._default = default
def writer(self, dbfile):
return self.Writer(dbfile, self._fixedlen, self._default)
def reader(self, dbfile, basepos, length, doccount):
return self.Reader(dbfile, basepos, length, doccount, self._fixedlen,
self._default)
class Writer(ColumnWriter):
def __init__(self, dbfile, fixedlen, default):
self._dbfile = dbfile
self._fixedlen = fixedlen
self._default = self._defaultbytes = default
self._count = 0
def __repr__(self):
return "<FixedBytes.Writer>"
def add(self, docnum, v):
if v == self._default:
return
if docnum > self._count:
self.fill(docnum)
assert len(v) == self._fixedlen
self._dbfile.write(v)
self._count = docnum + 1
class Reader(ColumnReader):
def __init__(self, dbfile, basepos, length, doccount, fixedlen,
default):
self._dbfile = dbfile
self._basepos = basepos
self._doccount = doccount
self._fixedlen = fixedlen
self._default = self._defaultbytes = default
self._count = length // fixedlen
def __repr__(self):
return "<FixedBytes.Reader>"
def __getitem__(self, docnum):
if docnum >= self._count:
return self._defaultbytes
pos = self._basepos + self._fixedlen * docnum
return self._dbfile.get(pos, self._fixedlen)
def __iter__(self):
count = self._count
default = self._default
for i in xrange(self._doccount):
if i < count:
yield self[i]
else:
yield default
# Variable/fixed length reference (enum) column
class RefBytesColumn(Column):
"""Stores variable-length or fixed-length byte strings, similar to
:class:`VarBytesColumn` and :class:`FixedBytesColumn`. However, where those
columns stores a value for each document, this column keeps a list of all
the unique values in the field, and for each document stores a short
pointer into the unique list. For fields where the number of possible
values is smaller than the number of documents (for example,
"category" or "chapter"), this saves significant space.
This column type supports a maximum of 65535 unique values across all
documents in a segment. You should generally use this column type where the
number of unique values is in no danger of approaching that number (for
example, a "tags" field). If you try to index too many unique values, the
column will convert additional unique values to the default value and issue
a warning using the ``warnings`` module (this will usually be preferable to
crashing the indexer and potentially losing indexed documents).
"""
# NOTE that RefBytes is reversible within a single column (we could just
# negate the reference number), but it's NOT reversible ACROSS SEGMENTS
# (since different segments can have different uniques values in their
# columns), so we have to say that the column type is not reversible
reversible = False
def __init__(self, fixedlen=0, default=None):
"""
:param fixedlen: an optional fixed length for the values. If you
specify a number other than 0, the column will require all values
to be the specified length.
:param default: a default value to use for documents that don't specify
one. If you don't specify a default, the column will use an empty
bytestring (``b''``), or if you specify a fixed length,
``b'\\x00' * fixedlen``.
"""
self._fixedlen = fixedlen
if default is None:
default = b("\x00") * fixedlen if fixedlen else emptybytes
elif fixedlen and len(default) != fixedlen:
raise ValueError
self._default = default
def writer(self, dbfile):
return self.Writer(dbfile, self._fixedlen, self._default)
def reader(self, dbfile, basepos, length, doccount):
return self.Reader(dbfile, basepos, length, doccount, self._fixedlen)
class Writer(ColumnWriter):
def __init__(self, dbfile, fixedlen, default):
self._dbfile = dbfile
self._fixedlen = fixedlen
self._default = default
# At first we'll buffer refs in a byte array. If the number of
# uniques stays below 256, we can just write the byte array. As
# soon as the ref count goes above 255, we know we're going to have
# to write shorts, so we'll switch to writing directly.
self._refs = array("B")
self._uniques = {default: 0}
self._count = 0
def __repr__(self):
return "<RefBytes.Writer>"
def fill(self, docnum):
if docnum > self._count:
if self._refs is not None:
self._refs.extend(0 for _ in xrange(docnum - self._count))
else:
dbfile = self._dbfile
for _ in xrange(docnum - self._count):
dbfile.write_ushort(0)
def add(self, docnum, v):
dbfile = self._dbfile
refs = self._refs
self.fill(docnum)
uniques = self._uniques
try:
ref = uniques[v]
except KeyError:
uniques[v] = ref = len(uniques)
if refs is not None and ref >= 256:
# We won't be able to use bytes, we have to switch to
# writing unbuffered ushorts
for n in refs:
dbfile.write_ushort(n)
refs = self._refs = None
if refs is not None:
self._refs.append(ref)
else:
if ref > 65535:
warnings.warn("RefBytesColumn dropped unique value %r" % v,
UserWarning)
ref = 0
dbfile.write_ushort(ref)
self._count = docnum + 1
def _write_uniques(self, typecode):
dbfile = self._dbfile
fixedlen = self._fixedlen
uniques = self._uniques
dbfile.write_varint(len(uniques))
# Sort unique values by position
vs = sorted(uniques.keys(), key=lambda key: uniques[key])
for v in vs:
if not fixedlen:
dbfile.write_varint(len(v))
dbfile.write(v)
def finish(self, doccount):
dbfile = self._dbfile
refs = self._refs
self.fill(doccount)
typecode = "H"
if refs is not None:
dbfile.write_array(refs)
typecode = refs.typecode
self._write_uniques(typecode)
dbfile.write_byte(ord(typecode))
class Reader(ColumnReader):
def __init__(self, dbfile, basepos, length, doccount, fixedlen):
self._dbfile = dbfile
self._basepos = basepos
self._doccount = doccount
self._fixedlen = fixedlen
self._typecode = chr(dbfile.get_byte(basepos + length - 1))
st = struct.Struct("!" + self._typecode)
self._unpack = st.unpack
self._itemsize = st.size
dbfile.seek(basepos + doccount * self._itemsize)
self._uniques = self._read_uniques()
def __repr__(self):
return "<RefBytes.Reader>"
def _read_uniques(self):
dbfile = self._dbfile
fixedlen = self._fixedlen
ucount = dbfile.read_varint()
length = fixedlen
uniques = []
for _ in xrange(ucount):
if not fixedlen:
length = dbfile.read_varint()
uniques.append(dbfile.read(length))
return uniques
def __getitem__(self, docnum):
pos = self._basepos + docnum * self._itemsize
ref = self._unpack(self._dbfile.get(pos, self._itemsize))[0]
return self._uniques[ref]
def __iter__(self):
get = self._dbfile.get
basepos = self._basepos
uniques = self._uniques
unpack = self._unpack
itemsize = self._itemsize
for i in xrange(self._doccount):
pos = basepos + i * itemsize
ref = unpack(get(pos, itemsize))[0]
yield uniques[ref]
# Numeric column
class NumericColumn(FixedBytesColumn):
"""Stores numbers (integers and floats) as compact binary.
"""
reversible = True
def __init__(self, typecode, default=0):
"""
:param typecode: a typecode character (as used by the ``struct``
module) specifying the number type. For example, ``"i"`` for
signed integers.
:param default: the default value to use for documents that don't
specify one.
"""
self._typecode = typecode
self._default = default
def writer(self, dbfile):
return self.Writer(dbfile, self._typecode, self._default)
def reader(self, dbfile, basepos, length, doccount):
return self.Reader(dbfile, basepos, length, doccount, self._typecode,
self._default)
def default_value(self, reverse=False):
v = self._default
if reverse:
v = 0 - v
return v
class Writer(FixedBytesColumn.Writer):
def __init__(self, dbfile, typecode, default):
self._dbfile = dbfile
self._pack = struct.Struct("!" + typecode).pack
self._default = default
self._defaultbytes = self._pack(default)
self._fixedlen = struct.calcsize(typecode)
self._count = 0
def __repr__(self):
return "<Numeric.Writer>"
def add(self, docnum, v):
if v == self._default:
return
if docnum > self._count:
self.fill(docnum)
self._dbfile.write(self._pack(v))
self._count = docnum + 1
class Reader(FixedBytesColumn.Reader):
def __init__(self, dbfile, basepos, length, doccount, typecode,
default):
self._dbfile = dbfile
self._basepos = basepos
self._doccount = doccount
self._default = default
self._reverse = False
self._typecode = typecode
self._unpack = struct.Struct("!" + typecode).unpack
self._defaultbytes = struct.pack("!" + typecode, default)
self._fixedlen = struct.calcsize(typecode)
self._count = length // self._fixedlen
def __repr__(self):
return "<Numeric.Reader>"
def __getitem__(self, docnum):
s = FixedBytesColumn.Reader.__getitem__(self, docnum)
return self._unpack(s)[0]
def sort_key(self, docnum):
key = self[docnum]
if self._reverse:
key = 0 - key
return key
def load(self):
if self._typecode in "qQ":
return list(self)
else:
return array(self._typecode, self)
def set_reverse(self):
self._reverse = True
# Column of boolean values
class BitColumn(Column):
"""Stores a column of True/False values compactly.
"""
reversible = True
_default = False
def __init__(self, compress_at=2048):
"""
:param compress_at: columns with this number of values or fewer will
be saved compressed on disk, and loaded into RAM for reading. Set
this to 0 to disable compression.
"""
self._compressat = compress_at
def writer(self, dbfile):
return self.Writer(dbfile, self._compressat)
def default_value(self, reverse=False):
return self._default ^ reverse
class Writer(ColumnWriter):
def __init__(self, dbfile, compressat):
self._dbfile = dbfile
self._compressat = compressat
self._bitset = BitSet()
def __repr__(self):
return "<Bit.Writer>"
def add(self, docnum, value):
if value:
self._bitset.add(docnum)
def finish(self, doccount):
dbfile = self._dbfile
bits = self._bitset.bits
if zlib and len(bits) <= self._compressat:
compressed = zlib.compress(array_tobytes(bits), 3)
dbfile.write(compressed)
dbfile.write_byte(1)
else:
dbfile.write_array(bits)
dbfile.write_byte(0)
class Reader(ColumnReader):
def __init__(self, dbfile, basepos, length, doccount):
self._dbfile = dbfile
self._basepos = basepos
self._length = length
self._doccount = doccount
self._reverse = False
compressed = dbfile.get_byte(basepos + (length - 1))
if compressed:
bbytes = zlib.decompress(dbfile.get(basepos, length - 1))
bitset = BitSet.from_bytes(bbytes)
else:
dbfile.seek(basepos)
bitset = OnDiskBitSet(dbfile, basepos, length - 1)
self._bitset = bitset
def id_set(self):
return self._bitset
def __repr__(self):
return "<Bit.Reader>"
def __getitem__(self, i):
return i in self._bitset
def sort_key(self, docnum):
return int(self[docnum] ^ self._reverse)
def __iter__(self):
i = 0
for num in self._bitset:
if num > i:
for _ in xrange(num - i):
yield False
yield True
i = num + 1
if self._doccount > i:
for _ in xrange(self._doccount - i):
yield False
def load(self):
if isinstance(self._bitset, OnDiskBitSet):
bs = self._dbfile.get_array(self._basepos, "B",
self._length - 1)
self._bitset = BitSet.from_bytes(bs)
return self
def set_reverse(self):
self._reverse = True
# Compressed variants
class CompressedBytesColumn(Column):
"""Stores variable-length byte strings compressed using deflate (by
default).
"""
def __init__(self, level=3, module="zlib"):
"""
:param level: the compression level to use.
:param module: a string containing the name of the compression module
to use. The default is "zlib". The module should export "compress"
and "decompress" functions.
"""
self._level = level
self._module = module
def writer(self, dbfile):
return self.Writer(dbfile, self._level, self._module)
def reader(self, dbfile, basepos, length, doccount):
return self.Reader(dbfile, basepos, length, doccount, self._module)
class Writer(VarBytesColumn.Writer):
def __init__(self, dbfile, level, module):
VarBytesColumn.Writer.__init__(self, dbfile)
self._level = level
self._compress = __import__(module).compress
def __repr__(self):
return "<CompressedBytes.Writer>"
def add(self, docnum, v):
v = self._compress(v, self._level)
VarBytesColumn.Writer.add(self, docnum, v)
class Reader(VarBytesColumn.Reader):
def __init__(self, dbfile, basepos, length, doccount, module):
VarBytesColumn.Reader.__init__(self, dbfile, basepos, length,
doccount)
self._decompress = __import__(module).decompress
def __repr__(self):
return "<CompressedBytes.Reader>"
def __getitem__(self, docnum):
v = VarBytesColumn.Reader.__getitem__(self, docnum)
if v:
v = self._decompress(v)
return v
def __iter__(self):
for v in VarBytesColumn.Reader.__iter__(self):
yield self._decompress(v)
def load(self):
return list(self)
class CompressedBlockColumn(Column):
"""An experimental column type that compresses and decompresses blocks of
values at a time. This can lead to high compression and decent performance
for columns with lots of very short values, but random access times are
usually terrible.
"""
def __init__(self, level=3, blocksize=32, module="zlib"):
"""
:param level: the compression level to use.
:param blocksize: the size (in KB) of each compressed block.
:param module: a string containing the name of the compression module
to use. The default is "zlib". The module should export "compress"
and "decompress" functions.
"""
self._level = level
self._blocksize = blocksize
self._module = module
def writer(self, dbfile):
return self.Writer(dbfile, self._level, self._blocksize, self._module)
def reader(self, dbfile, basepos, length, doccount):
return self.Reader(dbfile, basepos, length, doccount, self._module)
class Writer(ColumnWriter):
def __init__(self, dbfile, level, blocksize, module):
self._dbfile = dbfile
self._blocksize = blocksize * 1024
self._level = level
self._compress = __import__(module).compress
self._reset()
def __repr__(self):
return "<CompressedBlock.Writer>"
def _reset(self):
self._startdoc = None
self._block = emptybytes
self._lengths = []
def _emit(self):
dbfile = self._dbfile
block = self._compress(self._block, self._level)
header = (self._startdoc, self._lastdoc, len(block),
tuple(self._lengths))
dbfile.write_pickle(header)
dbfile.write(block)
def add(self, docnum, v):
if self._startdoc is None:
self._startdoc = docnum
self._lengths.append((docnum, len(v)))
self._lastdoc = docnum
self._block += v
if len(self._block) >= self._blocksize:
self._emit()
self._reset()
def finish(self, doccount):
# If there's still a pending block, write it out
if self._startdoc is not None:
self._emit()
class Reader(ColumnReader):
def __init__(self, dbfile, basepos, length, doccount, module):
ColumnReader.__init__(self, dbfile, basepos, length, doccount)
self._decompress = __import__(module).decompress
self._blocks = []
dbfile.seek(basepos)
pos = 0
while pos < length:
startdoc, enddoc, blocklen, lengths = dbfile.read_pickle()
here = dbfile.tell()
self._blocks.append((startdoc, enddoc, here, blocklen,
lengths))
dbfile.seek(blocklen, 1)
pos = here + blocklen
def __repr__(self):
return "<CompressedBlock.Reader>"
def _find_block(self, docnum):
# TODO: use binary search instead of linear
for i, b in enumerate(self._blocks):
if docnum < b[0]:
return None
elif docnum <= b[1]:
return i
return None
def _get_block(self, blocknum):
block = self._blocks[blocknum]
pos = block[2]
blocklen = block[3]
lengths = block[4]
data = self._decompress(self._dbfile.get(self._basepos + pos,
blocklen))
values = {}
base = 0
for docnum, vlen in lengths:
values[docnum] = data[base:base + vlen]
base += vlen
return values
def __getitem__(self, docnum):
i = self._find_block(docnum)
if i is None:
return emptybytes
return self._get_block(i)[docnum]
def __iter__(self):
last = -1
for i, block in enumerate(self._blocks):
startdoc = block[0]
enddoc = block[1]
if startdoc > (last + 1):
for _ in xrange(startdoc - last):
yield emptybytes
values = self._get_block(i)
for docnum in xrange(startdoc, enddoc + 1):
if docnum in values:
yield values[docnum]
else:
yield emptybytes
last = enddoc
if enddoc < self._doccount - 1:
for _ in xrange(self._doccount - enddoc):
yield emptybytes
class StructColumn(FixedBytesColumn):
def __init__(self, spec, default):
self._spec = spec
self._fixedlen = struct.calcsize(spec)
self._default = default
def writer(self, dbfile):
return self.Writer(dbfile, self._spec, self._default)
def reader(self, dbfile, basepos, length, doccount):
return self.Reader(dbfile, basepos, length, doccount, self._spec,
self._default)
class Writer(FixedBytesColumn.Writer):
def __init__(self, dbfile, spec, default):
self._dbfile = dbfile
self._struct = struct.Struct(spec)
self._fixedlen = self._struct.size
self._default = default
self._defaultbytes = self._struct.pack(*default)
self._count = 0
def __repr__(self):
return "<Struct.Writer>"
def add(self, docnum, v):
b = self._struct.pack(*v)
FixedBytesColumn.Writer.add(self, docnum, b)
class Reader(FixedBytesColumn.Reader):
def __init__(self, dbfile, basepos, length, doccount, spec, default):
self._dbfile = dbfile
self._basepos = basepos
self._doccount = doccount
self._struct = struct.Struct(spec)
self._fixedlen = self._struct.size
self._default = default
self._defaultbytes = self._struct.pack(*default)
self._count = length // self._fixedlen
def __repr__(self):
return "<Struct.Reader>"
def __getitem__(self, docnum):
v = FixedBytesColumn.Reader.__getitem__(self, docnum)
return self._struct.unpack(v)
# Utility readers
class EmptyColumnReader(ColumnReader):
"""Acts like a reader for a column with no stored values. Always returns
the default.
"""
def __init__(self, default, doccount):
"""
:param default: the value to return for all "get" requests.
:param doccount: the number of documents in the nominal column.
"""
self._default = default
self._doccount = doccount
def __getitem__(self, docnum):
return self._default
def __iter__(self):
return (self._default for _ in xrange(self._doccount))
def load(self):
return self
class MultiColumnReader(ColumnReader):
"""Serializes access to multiple column readers, making them appear to be
one large column.
"""
def __init__(self, readers, offsets=None):
"""
:param readers: a sequence of column reader objects.
"""
self._readers = readers
self._doc_offsets = []
self._doccount = 0
if offsets is None:
for r in readers:
self._doc_offsets.append(self._doccount)
self._doccount += len(r)
else:
assert len(offsets) == len(readers)
self._doc_offsets = offsets
def _document_reader(self, docnum):
return max(0, bisect_right(self._doc_offsets, docnum) - 1)
def _reader_and_docnum(self, docnum):
rnum = self._document_reader(docnum)
offset = self._doc_offsets[rnum]
return rnum, docnum - offset
def __getitem__(self, docnum):
x, y = self._reader_and_docnum(docnum)
return self._readers[x][y]
def __iter__(self):
for r in self._readers:
for v in r:
yield v
class TranslatingColumnReader(ColumnReader):
"""Calls a function to "translate" values from an underlying column reader
object before returning them.
``IndexReader`` objects can wrap a column reader with this object to call
``FieldType.from_column_value`` on the stored column value before returning
it the the user.
"""
def __init__(self, reader, translate):
"""
:param reader: the underlying ColumnReader object to get values from.
:param translate: a function that takes a value from the underlying
reader and returns a translated value.
"""
self._reader = reader
self._translate = translate
def raw_column(self):
"""Returns the underlying column reader.
"""
return self._reader
def __len__(self):
return len(self._reader)
def __getitem__(self, docnum):
return self._translate(self._reader[docnum])
def sort_key(self, docnum):
return self._reader.sort_key(docnum)
def __iter__(self):
translate = self._translate
return (translate(v) for v in self._reader)
def set_reverse(self):
self._reader.set_reverse()
# Column wrappers
class WrappedColumn(Column):
def __init__(self, child):
self._child = child
def writer(self, *args, **kwargs):
return self.Writer(self._child.writer(*args, **kwargs))
def reader(self, *args, **kwargs):
return self.Reader(self._child.reader(*args, **kwargs))
def stores_lists(self):
return self._child.stores_lists()
class WrappedColumnWriter(ColumnWriter):
def __init__(self, child):
self._child = child
def fill(self, docnum):
return self._child.fill(docnum)
def add(self, docnum, value):
return self._child.add(docnum, value)
def finish(self, docnum):
return self._child.finish(docnum)
class WrappedColumnReader(ColumnReader):
def __init__(self, child):
self._child = child
def __len__(self):
return len(self._child)
def __getitem__(self, docnum):
return self._child[docnum]
def sort_key(self, docnum):
return self._child.sort_key(docnum)
def __iter__(self):
return iter(self._child)
def load(self):
return list(self)
def set_reverse(self):
self._child.set_reverse()
class ClampedNumericColumn(WrappedColumn):
"""An experimental wrapper type for NumericColumn that clamps out-of-range
values instead of raising an exception.
"""
def reader(self, *args, **kwargs):
return self._child.reader(*args, **kwargs)
class Writer(WrappedColumnWriter):
def __init__(self, child):
self._child = child
self._min = typecode_min[child._typecode]
self._max = typecode_max[child._typecode]
def add(self, docnum, v):
v = min(v, self._min)
v = max(v, self._max)
self._child.add(docnum, v)
class PickleColumn(WrappedColumn):
"""Converts arbitrary objects to pickled bytestrings and stores them using
the wrapped column (usually a :class:`VarBytesColumn` or
:class:`CompressedBytesColumn`).
If you can express the value you want to store as a number or bytestring,
you should use the appropriate column type to avoid the time and size
overhead of pickling and unpickling.
"""
class Writer(WrappedColumnWriter):
def __repr__(self):
return "<PickleWriter>"
def add(self, docnum, v):
if v is None:
v = emptybytes
else:
v = dumps(v, -1)
self._child.add(docnum, v)
class Reader(WrappedColumnReader):
def __repr__(self):
return "<PickleReader>"
def __getitem__(self, docnum):
v = self._child[docnum]
if not v:
return None
else:
return loads(v)
def __iter__(self):
for v in self._child:
if not v:
yield None
else:
yield loads(v)
# List columns
class ListColumn(WrappedColumn):
def stores_lists(self):
return True
class ListColumnReader(ColumnReader):
def sort_key(self, docnum):
return self[docnum][0]
def __iter__(self):
for docnum in xrange(len(self)):
yield self[docnum]
class VarBytesListColumn(ListColumn):
def __init__(self):
self._child = VarBytesColumn()
class Writer(WrappedColumnWriter):
def add(self, docnum, ls):
out = [varint(len(ls))]
for v in ls:
assert isinstance(v, bytes_type)
out.append(varint(len(v)))
out.append(v)
self._child.add(emptybytes.join(out))
class Reader(WrappedColumnReader, ListColumnReader):
def __getitem__(self, docnum):
bio = BytesIO(self._child[docnum])
count = bio.read_varint()
out = []
for _ in xrange(count):
vlen = bio.read_varint()
v = bio.read(vlen)
out.append(v)
return out
class FixedBytesListColumn(ListColumn):
def __init__(self, fixedlen):
self._fixedlen = fixedlen
self._child = VarBytesColumn()
def writer(self, *args, **kwargs):
return self.Writer(self._child.writer(*args, **kwargs), self._fixedlen)
def reader(self, *args, **kwargs):
return self.Reader(self._child.reader(*args, **kwargs), self._fixedlen)
class Writer(WrappedColumnWriter):
def __init__(self, child, fixedlen):
self._child = child
self._fixedlen = fixedlen
self._lengths = GrowableArray()
self._count = 0
def add(self, docnum, ls):
out = []
for v in ls:
assert len(v) == self._fixedlen
out.append(v)
b = emptybytes.join(out)
self._child.add(docnum, b)
class Reader(WrappedColumnReader, ListColumnReader):
def __init__(self, child, fixedlen):
self._child = child
self._fixedlen = fixedlen
def __getitem__(self, docnum):
fixedlen = self._fixedlen
v = self._child[docnum]
if not v:
return []
ls = [v[i:i + fixedlen] for i in xrange(0, len(v), fixedlen)]
return ls
#class RefListColumn(Column):
# def __init__(self, fixedlen=0):
# """
# :param fixedlen: an optional fixed length for the values. If you
# specify a number other than 0, the column will require all values
# to be the specified length.
# :param default: a default value to use for documents that don't specify
# one. If you don't specify a default, the column will use an empty
# bytestring (``b''``), or if you specify a fixed length,
# ``b'\\x00' * fixedlen``.
# """
#
# self._fixedlen = fixedlen
#
# def stores_lists(self):
# return True
#
# def writer(self, dbfile):
# return self.Writer(dbfile, self._fixedlen)
#
# def reader(self, dbfile, basepos, length, doccount):
# return self.Reader(dbfile, basepos, length, doccount, self._fixedlen)
#
# class Writer(ColumnWriter):
# def __init__(self, dbfile, fixedlen):
# self._dbfile = dbfile
# self._fixedlen = fixedlen
#
# self._refs = GrowableArray(allow_longs=False)
# self._lengths = GrowableArray(allow_longs=False)
# self._count = 0
#
# def __repr__(self):
# return "<RefList.Writer>"
#
# def fill(self, docnum):
# if docnum > self._count:
# self._lengths.extend(0 for _ in xrange(docnum - self._count))
#
# def add(self, docnum, ls):
# uniques = self._uniques
# refs = self._refs
#
# self.fill(docnum)
# self._lengths.append(len(ls))
# for v in ls:
# try:
# i = uniques[v]
# except KeyError:
# uniques[v] = i = len(uniques)
# refs.append(i)
#
# self._count = docnum + 1
#
# def finish(self, doccount):
# dbfile = self._dbfile
# refs = self._refs.array
# lengths = self._lengths.array
#
# self.fill(doccount)
# dbfile.write_byte(ord(lengths.typecode))
# dbfile.write_array(lengths)
# dbfile.write_byte(ord(refs.typecode))
# self._write_uniques(refs.typecode)
# dbfile.write_array(refs)
#
# class Reader(ListColumnReader):
# def __init__(self, dbfile, basepos, length, doccount, fixedlen):
# self._dbfile = dbfile
# self._basepos = basepos
# self._doccount = doccount
# self._fixedlen = fixedlen
#
# dbfile.seek(basepos)
# lencode = chr(dbfile.read_byte())
# self._lengths = dbfile.read_array(lencode, doccount)
#
# self._typecode = chr(dbfile.read_byte())
# refst = struct.Struct("!" + self._typecode)
# self._unpack = refst.unpack
# self._itemsize = refst.size
#
# self._read_uniques()
# self._refbase = dbfile.tell()
#
# # Create an array of offsets into the references using the lengths
# offsets = array("i", (0,))
# for length in self._lengths:
# offsets.append(offsets[-1] + length)
# self._offsets = offsets
#
# def __repr__(self):
# return "<RefBytes.Reader>"
#
# def _get_ref(self, docnum):
# pos = self._basepos + 1 + docnum * self._itemsize
# return self._unpack(self._dbfile.get(pos, self._itemsize))[0]
#
# def __getitem__(self, docnum):
# offset = self._offsets[docnum]
# length = self._lengths[docnum]
#
# pos = self._refbase + offset * self._itemsize
# reflist = self._dbfile.get_array(pos, self._typecode, length)
# return [self._uniques[ref] for ref in reflist]
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