/usr/lib/python2.7/dist-packages/pbcore/data/variants.gff is in python-pbcore 1.2.11+dfsg-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 | ##gff-version 3
##pacbio-variant-version 2.1
##date Sat Mar 22 12:16:13 2014
##feature-ontology http://song.cvs.sourceforge.net/*checkout*/song/ontology/sofa.obo?revision=1.12
##source GenomicConsensus 0.8.0
##source-commandline /Users/dalexander/.virtualenvs/VE/bin/variantCaller.py --algorithm=plurality -q20 -x5 pbcore/data/aligned_reads_1.cmp.h5 -r /Users/dalexander/Data/lambdaNEB.fa -o /tmp/v.gff
##source-alignment-file /Users/dalexander/Dropbox/Sources/git/pbcore/pbcore/data/aligned_reads_1.cmp.h5
##source-reference-file /Users/dalexander/Data/lambdaNEB.fa
##sequence-region lambda_NEB3011 1 48502
lambda_NEB3011 . deletion 30890 30890 . . . reference=G;variantSeq=.;frequency=2;coverage=5;confidence=25
lambda_NEB3011 . insertion 30924 30924 . . . reference=.;variantSeq=G;frequency=2;coverage=5;confidence=25
|