/usr/share/python-cobra/data/invalid1.xml is in python-cobra-data 0.5.9-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 | <sbml xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" sboTerm="SBO:0000624" version="1" xmlns="http://www.sbml.org/sbml/level3/version1/core" fbc:required="false">
<model fbc:strict="true" id="invalid1">
<listOfUnitDefinitions>
<unitDefinition id="mmol_per_gDW_per_hr">
<listOfUnits>
<unit exponent="1" kind="mole" multiplier="1" scale="-3"/>
<unit exponent="-1" kind="gram" multiplier="1" scale="0"/>
<unit exponent="-1" kind="second" multiplier="3600" scale="0"/>
</listOfUnits>
</unitDefinition>
</listOfUnitDefinitions>
<fbc:listOfObjectives fbc:activeObjective="obj">
<fbc:objective fbc:id="obj" fbc:type="maximize">
<fbc:listOfFluxObjectives>
<fbc:fluxObjective fbc:reaction="invalid" fbc:coefficient="1"/>
</fbc:listOfFluxObjectives>
</fbc:objective>
</fbc:listOfObjectives>
<listOfParameters>
<parameter constant="true" id="cobra_default_lb" sboTerm="SBO:0000626" units="mmol_per_gDW_per_hr" value="-1000"/>
<parameter constant="true" id="cobra_default_ub" sboTerm="SBO:0000626" units="mmol_per_gDW_per_hr" value="1000"/>
<parameter constant="true" id="cobra_0_bound" sboTerm="SBO:0000626" units="mmol_per_gDW_per_hr" value="0"/>
</listOfParameters>
<listOfCompartments/>
<listOfSpecies>
<species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id=" M_g6p_c" name="D-Glucose 6-phosphate" metaid="M_g6p_c" compartment="c" fbc:chemicalFormula="C6H11O9P">
</species>
<species boundaryCondition="false" constant="false" hasOnlySubstanceUnits="false" id="$M_f6p_c" name="D-Fructose 6-phosphate" metaid="M_f6p_c" compartment="c" fbc:chemicalFormula="C6H11O9P">
</species>
</listOfSpecies>
<listOfReactions>
<reaction fast="false" id="R_PGI" reversible="true" name="glucose-6-phosphate isomerase" metaid="R_PGI" fbc:upperFluxBound="cobra_default_ub" fbc:lowerFluxBound="cobra_default_lb">
<listOfReactants>
<speciesReference constant="true" species="M_g6p_c" stoichiometry="1"/>
</listOfReactants>
<listOfProducts>
<speciesReference constant="true" species="M_f6p_c" stoichiometry="1"/>
</listOfProducts>
<fbc:geneProductAssociation>
<fbc:geneProductRef fbc:geneProduct="G_b4025"/>
</fbc:geneProductAssociation>
</reaction>
</listOfReactions>
</model>
</sbml>
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