This file is indexed.

/usr/bin/pt-ioprofile is in percona-toolkit 2.2.20-1.

This file is owned by root:root, with mode 0o755.

The actual contents of the file can be viewed below.

   1
   2
   3
   4
   5
   6
   7
   8
   9
  10
  11
  12
  13
  14
  15
  16
  17
  18
  19
  20
  21
  22
  23
  24
  25
  26
  27
  28
  29
  30
  31
  32
  33
  34
  35
  36
  37
  38
  39
  40
  41
  42
  43
  44
  45
  46
  47
  48
  49
  50
  51
  52
  53
  54
  55
  56
  57
  58
  59
  60
  61
  62
  63
  64
  65
  66
  67
  68
  69
  70
  71
  72
  73
  74
  75
  76
  77
  78
  79
  80
  81
  82
  83
  84
  85
  86
  87
  88
  89
  90
  91
  92
  93
  94
  95
  96
  97
  98
  99
 100
 101
 102
 103
 104
 105
 106
 107
 108
 109
 110
 111
 112
 113
 114
 115
 116
 117
 118
 119
 120
 121
 122
 123
 124
 125
 126
 127
 128
 129
 130
 131
 132
 133
 134
 135
 136
 137
 138
 139
 140
 141
 142
 143
 144
 145
 146
 147
 148
 149
 150
 151
 152
 153
 154
 155
 156
 157
 158
 159
 160
 161
 162
 163
 164
 165
 166
 167
 168
 169
 170
 171
 172
 173
 174
 175
 176
 177
 178
 179
 180
 181
 182
 183
 184
 185
 186
 187
 188
 189
 190
 191
 192
 193
 194
 195
 196
 197
 198
 199
 200
 201
 202
 203
 204
 205
 206
 207
 208
 209
 210
 211
 212
 213
 214
 215
 216
 217
 218
 219
 220
 221
 222
 223
 224
 225
 226
 227
 228
 229
 230
 231
 232
 233
 234
 235
 236
 237
 238
 239
 240
 241
 242
 243
 244
 245
 246
 247
 248
 249
 250
 251
 252
 253
 254
 255
 256
 257
 258
 259
 260
 261
 262
 263
 264
 265
 266
 267
 268
 269
 270
 271
 272
 273
 274
 275
 276
 277
 278
 279
 280
 281
 282
 283
 284
 285
 286
 287
 288
 289
 290
 291
 292
 293
 294
 295
 296
 297
 298
 299
 300
 301
 302
 303
 304
 305
 306
 307
 308
 309
 310
 311
 312
 313
 314
 315
 316
 317
 318
 319
 320
 321
 322
 323
 324
 325
 326
 327
 328
 329
 330
 331
 332
 333
 334
 335
 336
 337
 338
 339
 340
 341
 342
 343
 344
 345
 346
 347
 348
 349
 350
 351
 352
 353
 354
 355
 356
 357
 358
 359
 360
 361
 362
 363
 364
 365
 366
 367
 368
 369
 370
 371
 372
 373
 374
 375
 376
 377
 378
 379
 380
 381
 382
 383
 384
 385
 386
 387
 388
 389
 390
 391
 392
 393
 394
 395
 396
 397
 398
 399
 400
 401
 402
 403
 404
 405
 406
 407
 408
 409
 410
 411
 412
 413
 414
 415
 416
 417
 418
 419
 420
 421
 422
 423
 424
 425
 426
 427
 428
 429
 430
 431
 432
 433
 434
 435
 436
 437
 438
 439
 440
 441
 442
 443
 444
 445
 446
 447
 448
 449
 450
 451
 452
 453
 454
 455
 456
 457
 458
 459
 460
 461
 462
 463
 464
 465
 466
 467
 468
 469
 470
 471
 472
 473
 474
 475
 476
 477
 478
 479
 480
 481
 482
 483
 484
 485
 486
 487
 488
 489
 490
 491
 492
 493
 494
 495
 496
 497
 498
 499
 500
 501
 502
 503
 504
 505
 506
 507
 508
 509
 510
 511
 512
 513
 514
 515
 516
 517
 518
 519
 520
 521
 522
 523
 524
 525
 526
 527
 528
 529
 530
 531
 532
 533
 534
 535
 536
 537
 538
 539
 540
 541
 542
 543
 544
 545
 546
 547
 548
 549
 550
 551
 552
 553
 554
 555
 556
 557
 558
 559
 560
 561
 562
 563
 564
 565
 566
 567
 568
 569
 570
 571
 572
 573
 574
 575
 576
 577
 578
 579
 580
 581
 582
 583
 584
 585
 586
 587
 588
 589
 590
 591
 592
 593
 594
 595
 596
 597
 598
 599
 600
 601
 602
 603
 604
 605
 606
 607
 608
 609
 610
 611
 612
 613
 614
 615
 616
 617
 618
 619
 620
 621
 622
 623
 624
 625
 626
 627
 628
 629
 630
 631
 632
 633
 634
 635
 636
 637
 638
 639
 640
 641
 642
 643
 644
 645
 646
 647
 648
 649
 650
 651
 652
 653
 654
 655
 656
 657
 658
 659
 660
 661
 662
 663
 664
 665
 666
 667
 668
 669
 670
 671
 672
 673
 674
 675
 676
 677
 678
 679
 680
 681
 682
 683
 684
 685
 686
 687
 688
 689
 690
 691
 692
 693
 694
 695
 696
 697
 698
 699
 700
 701
 702
 703
 704
 705
 706
 707
 708
 709
 710
 711
 712
 713
 714
 715
 716
 717
 718
 719
 720
 721
 722
 723
 724
 725
 726
 727
 728
 729
 730
 731
 732
 733
 734
 735
 736
 737
 738
 739
 740
 741
 742
 743
 744
 745
 746
 747
 748
 749
 750
 751
 752
 753
 754
 755
 756
 757
 758
 759
 760
 761
 762
 763
 764
 765
 766
 767
 768
 769
 770
 771
 772
 773
 774
 775
 776
 777
 778
 779
 780
 781
 782
 783
 784
 785
 786
 787
 788
 789
 790
 791
 792
 793
 794
 795
 796
 797
 798
 799
 800
 801
 802
 803
 804
 805
 806
 807
 808
 809
 810
 811
 812
 813
 814
 815
 816
 817
 818
 819
 820
 821
 822
 823
 824
 825
 826
 827
 828
 829
 830
 831
 832
 833
 834
 835
 836
 837
 838
 839
 840
 841
 842
 843
 844
 845
 846
 847
 848
 849
 850
 851
 852
 853
 854
 855
 856
 857
 858
 859
 860
 861
 862
 863
 864
 865
 866
 867
 868
 869
 870
 871
 872
 873
 874
 875
 876
 877
 878
 879
 880
 881
 882
 883
 884
 885
 886
 887
 888
 889
 890
 891
 892
 893
 894
 895
 896
 897
 898
 899
 900
 901
 902
 903
 904
 905
 906
 907
 908
 909
 910
 911
 912
 913
 914
 915
 916
 917
 918
 919
 920
 921
 922
 923
 924
 925
 926
 927
 928
 929
 930
 931
 932
 933
 934
 935
 936
 937
 938
 939
 940
 941
 942
 943
 944
 945
 946
 947
 948
 949
 950
 951
 952
 953
 954
 955
 956
 957
 958
 959
 960
 961
 962
 963
 964
 965
 966
 967
 968
 969
 970
 971
 972
 973
 974
 975
 976
 977
 978
 979
 980
 981
 982
 983
 984
 985
 986
 987
 988
 989
 990
 991
 992
 993
 994
 995
 996
 997
 998
 999
1000
1001
1002
1003
1004
1005
1006
1007
1008
1009
1010
1011
1012
1013
1014
1015
1016
1017
1018
1019
1020
1021
1022
1023
1024
1025
1026
1027
1028
1029
1030
1031
1032
1033
1034
1035
1036
1037
1038
1039
1040
1041
1042
1043
1044
1045
1046
1047
1048
1049
1050
1051
1052
1053
1054
1055
1056
1057
1058
1059
1060
1061
1062
1063
1064
1065
1066
1067
1068
1069
1070
1071
1072
1073
1074
1075
1076
1077
1078
1079
1080
1081
1082
1083
1084
1085
1086
1087
1088
1089
1090
1091
1092
1093
1094
1095
1096
1097
1098
1099
1100
1101
1102
1103
1104
1105
1106
1107
1108
1109
1110
1111
1112
1113
1114
1115
1116
1117
1118
1119
1120
1121
1122
1123
1124
1125
1126
1127
1128
1129
1130
1131
1132
#!/usr/bin/env bash

# This program is part of Percona Toolkit: http://www.percona.com/software/
# See "COPYRIGHT, LICENSE, AND WARRANTY" at the end of this file for legal
# notices and disclaimers.

# ###########################################################################
# log_warn_die package
# This package is a copy without comments from the original.  The original
# with comments and its test file can be found in the Bazaar repository at,
#   lib/bash/log_warn_die.sh
#   t/lib/bash/log_warn_die.sh
# See https://launchpad.net/percona-toolkit for more information.
# ###########################################################################


set -u

PTFUNCNAME=""
PTDEBUG="${PTDEBUG:-""}"
EXIT_STATUS=0

ts() {
   TS=$(date +%F-%T | tr ':-' '_')
   echo "$TS $*"
}

info() {
   [ ${OPT_VERBOSE:-3} -ge 3 ] && ts "$*"
}

log() {
   [ ${OPT_VERBOSE:-3} -ge 2 ] && ts "$*"
}

warn() {
   [ ${OPT_VERBOSE:-3} -ge 1 ] && ts "$*" >&2
   EXIT_STATUS=1
}

die() {
   ts "$*" >&2
   EXIT_STATUS=1
   exit 1
}

_d () {
   [ "$PTDEBUG" ] && echo "# $PTFUNCNAME: $(ts "$*")" >&2
}

# ###########################################################################
# End log_warn_die package
# ###########################################################################

# ###########################################################################
# parse_options package
# This package is a copy without comments from the original.  The original
# with comments and its test file can be found in the Bazaar repository at,
#   lib/bash/parse_options.sh
#   t/lib/bash/parse_options.sh
# See https://launchpad.net/percona-toolkit for more information.
# ###########################################################################





set -u

ARGV=""           # Non-option args (probably input files)
EXT_ARGV=""       # Everything after -- (args for an external command)
HAVE_EXT_ARGV=""  # Got --, everything else is put into EXT_ARGV
OPT_ERRS=0        # How many command line option errors
OPT_VERSION=""    # If --version was specified
OPT_HELP=""       # If --help was specified
PO_DIR=""         # Directory with program option spec files

usage() {
   local file="$1"

   local usage="$(grep '^Usage: ' "$file")"
   echo $usage
   echo
   echo "For more information, 'man $TOOL' or 'perldoc $file'."
}

usage_or_errors() {
   local file="$1"
   local version=""

   if [ "$OPT_VERSION" ]; then
      version=$(grep '^pt-[^ ]\+ [0-9]' "$file")
      echo "$version"
      return 1
   fi

   if [ "$OPT_HELP" ]; then
      usage "$file"
      echo
      echo "Command line options:"
      echo
      perl -e '
         use strict;
         use warnings FATAL => qw(all);
         my $lcol = 20;         # Allow this much space for option names.
         my $rcol = 80 - $lcol; # The terminal is assumed to be 80 chars wide.
         my $name;
         while ( <> ) {
            my $line = $_;
            chomp $line;
            if ( $line =~ s/^long:/  --/ ) {
               $name = $line;
            }
            elsif ( $line =~ s/^desc:// ) {
               $line =~ s/ +$//mg;
               my @lines = grep { $_      }
                           $line =~ m/(.{0,$rcol})(?:\s+|\Z)/g;
               if ( length($name) >= $lcol ) {
                  print $name, "\n", (q{ } x $lcol);
               }
               else {
                  printf "%-${lcol}s", $name;
               }
               print join("\n" . (q{ } x $lcol), @lines);
               print "\n";
            }
         }
      ' "$PO_DIR"/*
      echo
      echo "Options and values after processing arguments:"
      echo
      (
         cd "$PO_DIR"
         for opt in *; do
            local varname="OPT_$(echo "$opt" | tr a-z- A-Z_)"
            eval local varvalue=\$$varname
            if ! grep -q "type:" "$PO_DIR/$opt" >/dev/null; then
               if [ "$varvalue" -a "$varvalue" = "yes" ];
                  then varvalue="TRUE"
               else
                  varvalue="FALSE"
               fi
            fi
            printf -- "  --%-30s %s" "$opt" "${varvalue:-(No value)}"
            echo
         done
      )
      return 1
   fi

   if [ $OPT_ERRS -gt 0 ]; then
      echo
      usage "$file"
      return 1
   fi

   return 0
}

option_error() {
   local err="$1"
   OPT_ERRS=$(($OPT_ERRS + 1))
   echo "$err" >&2
}

parse_options() {
   local file="$1"
   shift

   ARGV=""
   EXT_ARGV=""
   HAVE_EXT_ARGV=""
   OPT_ERRS=0
   OPT_VERSION=""
   OPT_HELP=""
   PO_DIR="$PT_TMPDIR/po"

   if [ ! -d "$PO_DIR" ]; then
      mkdir "$PO_DIR"
      if [ $? -ne 0 ]; then
         echo "Cannot mkdir $PO_DIR" >&2
         exit 1
      fi
   fi

   rm -rf "$PO_DIR"/*
   if [ $? -ne 0 ]; then
      echo "Cannot rm -rf $PO_DIR/*" >&2
      exit 1
   fi

   _parse_pod "$file"  # Parse POD into program option (po) spec files
   _eval_po            # Eval po into existence with default values

   if [ $# -ge 2 ] &&  [ "$1" = "--config" ]; then
      shift  # --config
      local user_config_files="$1"
      shift  # that ^
      local IFS=","
      for user_config_file in $user_config_files; do
         _parse_config_files "$user_config_file"
      done
   else
      _parse_config_files "/etc/percona-toolkit/percona-toolkit.conf" "/etc/percona-toolkit/$TOOL.conf"
      if [ "${HOME:-}" ]; then
         _parse_config_files "$HOME/.percona-toolkit.conf" "$HOME/.$TOOL.conf"
      fi
   fi

   _parse_command_line "${@:-""}"
}

_parse_pod() {
   local file="$1"

   PO_FILE="$file" PO_DIR="$PO_DIR" perl -e '
      $/ = "";
      my $file = $ENV{PO_FILE};
      open my $fh, "<", $file or die "Cannot open $file: $!";
      while ( defined(my $para = <$fh>) ) {
         next unless $para =~ m/^=head1 OPTIONS/;
         while ( defined(my $para = <$fh>) ) {
            last if $para =~ m/^=head1/;
            chomp;
            if ( $para =~ m/^=item --(\S+)/ ) {
               my $opt  = $1;
               my $file = "$ENV{PO_DIR}/$opt";
               open my $opt_fh, ">", $file or die "Cannot open $file: $!";
               print $opt_fh "long:$opt\n";
               $para = <$fh>;
               chomp;
               if ( $para =~ m/^[a-z ]+:/ ) {
                  map {
                     chomp;
                     my ($attrib, $val) = split(/: /, $_);
                     print $opt_fh "$attrib:$val\n";
                  } split(/; /, $para);
                  $para = <$fh>;
                  chomp;
               }
               my ($desc) = $para =~ m/^([^?.]+)/;
               print $opt_fh "desc:$desc.\n";
               close $opt_fh;
            }
         }
         last;
      }
   '
}

_eval_po() {
   local IFS=":"
   for opt_spec in "$PO_DIR"/*; do
      local opt=""
      local default_val=""
      local neg=0
      local size=0
      while read key val; do
         case "$key" in
            long)
               opt=$(echo $val | sed 's/-/_/g' | tr '[:lower:]' '[:upper:]')
               ;;
            default)
               default_val="$val"
               ;;
            "short form")
               ;;
            type)
               [ "$val" = "size" ] && size=1
               ;;
            desc)
               ;;
            negatable)
               if [ "$val" = "yes" ]; then
                  neg=1
               fi
               ;;
            *)
               echo "Invalid attribute in $opt_spec: $line" >&2
               exit 1
         esac 
      done < "$opt_spec"

      if [ -z "$opt" ]; then
         echo "No long attribute in option spec $opt_spec" >&2
         exit 1
      fi

      if [ $neg -eq 1 ]; then
         if [ -z "$default_val" ] || [ "$default_val" != "yes" ]; then
            echo "Option $opt_spec is negatable but not default: yes" >&2
            exit 1
         fi
      fi

      if [ $size -eq 1 -a -n "$default_val" ]; then
         default_val=$(size_to_bytes $default_val)
      fi

      eval "OPT_${opt}"="$default_val"
   done
}

_parse_config_files() {

   for config_file in "${@:-""}"; do
      test -f "$config_file" || continue

      while read config_opt; do

         echo "$config_opt" | grep '^[ ]*[^#]' >/dev/null 2>&1 || continue

         config_opt="$(echo "$config_opt" | sed -e 's/^ *//g' -e 's/ *$//g' -e 's/[ ]*=[ ]*/=/' -e 's/[ ]*#.*$//')"

         [ "$config_opt" = "" ] && continue

         echo "$config_opt" | grep -v 'version-check' >/dev/null 2>&1 || continue

         if ! [ "$HAVE_EXT_ARGV" ]; then
            config_opt="--$config_opt"
         fi

         _parse_command_line "$config_opt"

      done < "$config_file"

      HAVE_EXT_ARGV=""  # reset for each file

   done
}

_parse_command_line() {
   local opt=""
   local val=""
   local next_opt_is_val=""
   local opt_is_ok=""
   local opt_is_negated=""
   local real_opt=""
   local required_arg=""
   local spec=""

   for opt in "${@:-""}"; do
      if [ "$opt" = "--" -o "$opt" = "----" ]; then
         HAVE_EXT_ARGV=1
         continue
      fi
      if [ "$HAVE_EXT_ARGV" ]; then
         if [ "$EXT_ARGV" ]; then
            EXT_ARGV="$EXT_ARGV $opt"
         else
            EXT_ARGV="$opt"
         fi
         continue
      fi

      if [ "$next_opt_is_val" ]; then
         next_opt_is_val=""
         if [ $# -eq 0 ] || [ $(expr "$opt" : "\-") -eq 1 ]; then
            option_error "$real_opt requires a $required_arg argument"
            continue
         fi
         val="$opt"
         opt_is_ok=1
      else
         if [ $(expr "$opt" : "\-") -eq 0 ]; then
            if [ -z "$ARGV" ]; then
               ARGV="$opt"
            else
               ARGV="$ARGV $opt"
            fi
            continue
         fi

         real_opt="$opt"

         if $(echo $opt | grep '^--no[^-]' >/dev/null); then
            local base_opt=$(echo $opt | sed 's/^--no//')
            if [ -f "$PT_TMPDIR/po/$base_opt" ]; then
               opt_is_negated=1
               opt="$base_opt"
            else
               opt_is_negated=""
               opt=$(echo $opt | sed 's/^-*//')
            fi
         else
            if $(echo $opt | grep '^--no-' >/dev/null); then
               opt_is_negated=1
               opt=$(echo $opt | sed 's/^--no-//')
            else
               opt_is_negated=""
               opt=$(echo $opt | sed 's/^-*//')
            fi
         fi

         if $(echo $opt | grep '^[a-z-][a-z-]*=' >/dev/null 2>&1); then
            val="$(echo $opt | awk -F= '{print $2}')"
            opt="$(echo $opt | awk -F= '{print $1}')"
         fi

         if [ -f "$PT_TMPDIR/po/$opt" ]; then
            spec="$PT_TMPDIR/po/$opt"
         else
            spec=$(grep "^short form:-$opt\$" "$PT_TMPDIR"/po/* | cut -d ':' -f 1)
            if [ -z "$spec"  ]; then
               option_error "Unknown option: $real_opt"
               continue
            fi
         fi

         required_arg=$(cat "$spec" | awk -F: '/^type:/{print $2}')
         if [ "$required_arg" ]; then
            if [ "$val" ]; then
               opt_is_ok=1
            else
               next_opt_is_val=1
            fi
         else
            if [ "$val" ]; then
               option_error "Option $real_opt does not take a value"
               continue
            fi 
            if [ "$opt_is_negated" ]; then
               val=""
            else
               val="yes"
            fi
            opt_is_ok=1
         fi
      fi

      if [ "$opt_is_ok" ]; then
         opt=$(cat "$spec" | grep '^long:' | cut -d':' -f2 | sed 's/-/_/g' | tr '[:lower:]' '[:upper:]')

         if grep "^type:size" "$spec" >/dev/null; then
            val=$(size_to_bytes $val)
         fi

         eval "OPT_$opt"="'$val'"

         opt=""
         val=""
         next_opt_is_val=""
         opt_is_ok=""
         opt_is_negated=""
         real_opt=""
         required_arg=""
         spec=""
      fi
   done
}

size_to_bytes() {
   local size="$1"
   echo $size | perl -ne '%f=(B=>1, K=>1_024, M=>1_048_576, G=>1_073_741_824, T=>1_099_511_627_776); m/^(\d+)([kMGT])?/i; print $1 * $f{uc($2 || "B")};'
}

# ###########################################################################
# End parse_options package
# ###########################################################################

# ###########################################################################
# tmpdir package
# This package is a copy without comments from the original.  The original
# with comments and its test file can be found in the Bazaar repository at,
#   lib/bash/tmpdir.sh
#   t/lib/bash/tmpdir.sh
# See https://launchpad.net/percona-toolkit for more information.
# ###########################################################################


set -u

PT_TMPDIR=""

mk_tmpdir() {
   local dir="${1:-""}"

   if [ -n "$dir" ]; then
      if [ ! -d "$dir" ]; then
         mkdir "$dir" || die "Cannot make tmpdir $dir"
      fi
      PT_TMPDIR="$dir"
   else
      local tool="${0##*/}"
      local pid="$$"
      PT_TMPDIR=`mktemp -d -t "${tool}.${pid}.XXXXXX"` \
         || die "Cannot make secure tmpdir"
   fi
}

rm_tmpdir() {
   if [ -n "$PT_TMPDIR" ] && [ -d "$PT_TMPDIR" ]; then
      rm -rf "$PT_TMPDIR"
   fi
   PT_TMPDIR=""
}

# ###########################################################################
# End tmpdir package
# ###########################################################################

# ###########################################################################
# alt_cmds package
# This package is a copy without comments from the original.  The original
# with comments and its test file can be found in the Bazaar repository at,
#   lib/bash/alt_cmds.sh
#   t/lib/bash/alt_cmds.sh
# See https://launchpad.net/percona-toolkit for more information.
# ###########################################################################


set -u

_seq() {
   local i="$1"
   awk "BEGIN { for(i=1; i<=$i; i++) print i; }"
}

_pidof() {
   local cmd="$1"
   if ! pidof "$cmd" 2>/dev/null; then
      ps -eo pid,ucomm | awk -v comm="$cmd" '$2 == comm { print $1 }'
   fi
}

_lsof() {
   local pid="$1"
   if ! lsof -p $pid 2>/dev/null; then
      /bin/ls -l /proc/$pid/fd 2>/dev/null
   fi
}



_which() {
   if [ -x /usr/bin/which ]; then
      /usr/bin/which "$1" 2>/dev/null | awk '{print $1}'
   elif which which 1>/dev/null 2>&1; then
      which "$1" 2>/dev/null | awk '{print $1}'
   else
      echo "$1"
   fi
}

# ###########################################################################
# End alt_cmds package
# ###########################################################################

# ###########################################################################
# Global variables
# ###########################################################################
TOOL="pt-ioprofile"

# ###########################################################################
# Subroutines
# ###########################################################################

# Read the 'lsof' and 'strace' from the file, and convert it into lines:
# pid function fd_no size timing filename
# The arguments are the files to summarize.
tabulate_strace() {
   cat > $PT_TMPDIR/tabulate_strace.awk <<EOF
   BEGIN {
      # These are function names, or partial function names, that we care about.
      # Later we will ignore any function whose name doesn't look like these.
      # Keep this in sync with wanted_pat in summarize_strace, too.
      wanted_pat  = "read|write|sync|open|close|getdents|seek|fcntl|ftrunc";
      cwd         = ""; # The process's cwd to prepend to ./ filenames later.
      mode        = 0;  # Whether we're in the lsof or strace part of the input.
   }
   /^COMMAND/ { mode = "lsof";   }
   /^Process/ { mode = "strace"; }
   {
      # Save the file descriptor and name for lookup later.
      if ( mode == "lsof" ) {
         if ( \$5 == "REG" ) {
            fd = \$4;
            gsub(/[rwu-].*/, "", fd);
            filename_for[fd] = \$9;
         }
         else if ( \$5 == "DIR" && \$4 == "cwd" ) {
            cwd = \$NF;
         }
      }
      else if ( mode == "strace" && \$1 ~ /^\[/ ) {
         pid = substr(\$2, 1, length(\$2) - 1);

         # Continuation of a previously <unfinished ...> function call
         if ( \$3 == "<..." ) {
            funcn      = \$4;
            fd         = unfinished[pid "," funcn];
            if ( fd > 0 ) {
               filename = filename_for[fd];
               if ( filename != "" ) {
                  if ( funcn ~ /open/ ) {
                     size = 0;
                  }
                  else {
                     size_field = NF - 1;
                     size       = \$size_field;
                  }
                  timing = \$NF;
                  gsub(/[<>]/, "", timing);
                  print pid, funcn, fd, size, timing, filename;
               }
            }
         }

         # The beginning of a function call (not resumed).  There are basically
         # two cases here: the whole call is on one line, and it's unfinished
         # and ends on a later line.
         else {
            funcn = substr(\$3, 1, index(\$3, "(") - 1);
            if ( funcn ~ wanted_pat ) {
               # Save the file descriptor and name for lookup later.
               if ( funcn ~ /open/ ) {
                  filename = substr(\$3, index(\$3, "(") + 2);
                  filename = substr(filename, 1, index(filename, "\\"") - 1);
                  if ( "./" == substr(filename, 1, 2) ) {
                     # Translate relative filenames into absolute ones.
                     filename = cwd substr(filename, 2);
                  }
                  fd_field         = NF - 1;
                  fd               = \$fd_field;
                  filename_for[fd] = filename;
               }

               else {
                  fd  = substr(\$3, index(\$3, "(") + 1);
                  gsub(/[^0-9].*/, "", fd);
               }

               # Save unfinished calls for later
               if ( \$NF == "...>" ) {
                  unfinished[pid "," funcn] = fd;
               }

               # Function calls that are all on one line, not <unfinished ...>
               else {
                  filename = filename_for[fd];
                  if ( filename != "" ) {
                     if ( funcn ~ /open/ ) {
                        size = 0;
                     }
                     else {
                        size_field = NF - 1;
                        size       = \$size_field;
                     }
                     timing = \$NF;
                     gsub(/[<>]/, "", timing);
                     print pid, funcn, fd, size, timing, filename;
                  }
               }
            }
         }
      }
   }
EOF
   awk -f $PT_TMPDIR/tabulate_strace.awk "$@"
}

# Takes as input the output from tabulate_strace.  Arguments are just a subset
# of the overall command-line options, but no validation is needed.  The last
# command-line option is the filename of the tabulate_strace output.
summarize_strace() {
   local func="$1"
   local cell="$2"
   local group_by="$3"
   local file="$4"

   cat > "$PT_TMPDIR/summarize_strace.awk" <<EOF
   BEGIN {
      # These are function names, or partial function names, that we care about.
      # Later we will ignore any function whose name doesn't look like these.
      # Keep this in sync with wanted_pat in tabulate_strace, too.
      wanted_pat  = "read|write|sync|open|close|getdents|seek|fcntl|ftrunc";
      wanted["1"] = "read"; # Will match pread, pread64, etc.
      wanted["2"] = "write";
      wanted["3"] = "sync";
      wanted["4"] = "open";
      wanted["5"] = "close";
      wanted["6"] = "getdents";
      wanted["7"] = "seek";
      wanted["8"] = "fcntl";
      wanted["9"] = "ftrunc";
      num_wanted  = 9;
      col_pat     = "%10d ";
      hdr_pat     = "%10s ";
      if ( "$cell" == "times" ) {
         col_pat  = "%10.6f ";
      }
   }
   {
      pid      = \$1;
      funcn    = \$2;
      fd       = \$3;
      size     = \$4;
      timing   = \$5;
      filename = \$6;
      all      = "all";
      if ( funcn ~ wanted_pat ) {
         func_names[funcn]++;
         groupby[$group_by]++;
         count[funcn "," $group_by]++;
         sizes[funcn "," $group_by] += size;
         times[funcn "," $group_by] += timing;
      }
   }
   END {
      # Choose which functions we want to print out, ordered by wanted[].
      num_functions = 0;
      if ( "$group_by" != "all" ) {
         printf(hdr_pat, "total");
      }
      for (i = 1; i <= num_wanted; i++) {
         pat = wanted[i];
         for (funcn in func_names) {
            if ( funcn ~ pat && !accepted[funcn] ) {
               num_functions++;
               funcs_to_print[num_functions] = funcn;
               accepted[funcn]++;
               if ( "$group_by" != "all" ) {
                  printf(hdr_pat, funcn);
               }
            }
         }
      }
      if ( "$group_by" != "all" ) {
         print "$group_by";
      }

      # groupby[] contains only files/pids that have been referenced by some
      # functions, so we are automatically including only files that have some
      # activity from wanted functions. We iterate through each function name
      # and print the cell of the table.
      for (thing in groupby) {
         total_count = 0;
         total_sizes = 0;
         total_times = 0;
         output      = "";
         for (i = 1; i <= num_functions; i++) {
            funcn = funcs_to_print[i];
            total_count += count[funcn "," thing];
            total_sizes += sizes[funcn "," thing];
            total_times += times[funcn "," thing];
            result       = $cell[funcn "," thing];
            if ( "$func" == "avg" ) {
               if ( count[funcn "," thing] > 0 ) {
                  result /= count[funcn "," thing];
               }
               else {
                  result = 0;
               }
            }
            if ( "$group_by" != "all" ) {
               output = output sprintf(col_pat, result);
            }
            else {
               printf(col_pat funcn "\\n", result);
            }
         }
         total_result = total_$cell;
         if ( "$func" == "avg" ) {
            if ( total_count > 0 ) {
               total_result /= total_count;
            }
            else {
               total_result = 0;
            }
         }
         printf(col_pat, total_result);
         if ( "$group_by" != "all" ) {
            print(output thing);
         }
         else {
            print "TOTAL";
         }
      }
   }
EOF

   awk -f $PT_TMPDIR/summarize_strace.awk "$file" > $PT_TMPDIR/summarized_samples
   if [ "$group_by" != "all" ]; then
      head -n1 $PT_TMPDIR/summarized_samples
      tail -n +2 $PT_TMPDIR/summarized_samples | sort -rn -k1
   else
      grep TOTAL $PT_TMPDIR/summarized_samples
      grep -v TOTAL $PT_TMPDIR/summarized_samples | sort -rn -k1
   fi
}

sigtrap() {
   warn "Caught signal, forcing exit"
   rm_tmpdir
   exit $EXIT_STATUS
}

main() {
   trap sigtrap HUP INT TERM
   if [ $# -gt 0 ]; then
      # Summarize the files the user passed in.
      tabulate_strace "$@" > $PT_TMPDIR/tabulated_samples
   else
      # There's no file to analyze, so we'll make one.
      if which strace > /dev/null 2>&1; then

         local samples=${OPT_SAVE_SAMPLES:-"$PT_TMPDIR/samples"}

         # Get the PID of the process to profile, unless the user
         # gave us it explicitly with --profile-pid.
         local proc_pid="$OPT_PROFILE_PID"
         if [ -z "$proc_pid" ]; then
            proc_pid=$(_pidof "$OPT_PROFILE_PROCESS" | awk '{print $1; exit;'})
         fi

         date

         if [ "$proc_pid" ]; then
            echo "Tracing process ID $proc_pid"

            _lsof "$proc_pid" > "$samples" 2>&1
            if [ "$?" -ne "0" ]; then
               echo "Error: could not execute lsof, error code $?"
               EXIT_STATUS=1
               return 1
            fi

            strace -T -s 0 -f -p $proc_pid >> "$samples" 2>&1 &
            if [ "$?" -ne "0" ]; then
               echo "Error: could not execute strace, error code $?"
               EXIT_STATUS=1
               return 1
            fi
            strace_pid=$!
            # sleep one second then check to make sure the strace is
            # actually running
            sleep 1
            ps -p $strace_pid > /dev/null 2>&1
            if [ "$?" -ne "0" ]; then
               echo "Cannot find strace process" >&2
               tail "$samples" >&2
               EXIT_STATUS=1
               return 1
            fi 
            # sleep for interval -1, since we did a one second sleep
            # before checking for the PID of strace
            if [ $((${OPT_RUN_TIME}-1)) -gt 0 ]; then
                sleep $((${OPT_RUN_TIME}-1))
            fi

            kill -s 2 $strace_pid

            sleep 1
            kill -s 15 $strace_pid 2>/dev/null

            # Sometimes strace leaves threads/processes in T status.
            kill -s 18 $proc_pid

            # Summarize the output we just generated.
            tabulate_strace "$samples" > $PT_TMPDIR/tabulated_samples
         else
            echo "Cannot determine PID of $OPT_PROFILE_PROCESS process" >&2
            EXIT_STATUS=1
            return 1
         fi
      else
         echo "strace is not in PATH" >&2
         EXIT_STATUS=1
         return 1
      fi
   fi

   summarize_strace  \
      $OPT_AGGREGATE \
      $OPT_CELL      \
      $OPT_GROUP_BY  \
      "$PT_TMPDIR/tabulated_samples"
}

# Execute the program if it was not included from another file.
# This makes it possible to include without executing, and thus test.
if    [ "${0##*/}" = "$TOOL" ] \
   || [ "${0##*/}" = "bash" -a "${_:-""}" = "$0" ]; then

   # Parse command line options.  We must do this first so we can
   # see if --daemonize was specified.
   mk_tmpdir
   parse_options "$0" "$@"
   usage_or_errors "$0"
   po_status=$?
   rm_tmpdir
   if [ $po_status -eq 0 ]; then
      # Make a secure tmpdir.
      mk_tmpdir
      # XXX
      # TODO: This should be quoted but because the way parse_options()
      # currently works, it flattens files in $@ (i.e. given on the cmd
      # line) into the string $ARGV.  So if we pass "$ARGV" then other
      # functions will see 1 file named "file1 file2" instead of "file1"
      # "file2".
      main $ARGV
      # Clean up.
      rm_tmpdir
   else
      [ $OPT_ERRS -gt 0 ] && EXIT_STATUS=1
   fi
   exit $EXIT_STATUS
fi

# ############################################################################
# Documentation
# ############################################################################
:<<'DOCUMENTATION'
=pod

=head1 NAME

pt-ioprofile - Watch process IO and print a table of file and I/O activity.

=head1 SYNOPSIS

Usage: pt-ioprofile [OPTIONS] [FILE]

pt-ioprofile does two things: 1) get lsof+strace for -s seconds, 2) aggregate
the result. If you specify a FILE, then step 1) is not performed.

=head1 RISKS

B<WARNING>: pt-ioprofile freezes the server and may crash the process, or
make it perform badly after detaching, or leave it in a sleeping state!
Before using this tool, please:

=over

=item * Read the tool's documentation

=item * Review the tool's known L<"BUGS">

=item * Test the tool on a non-production server

=item * Backup your production server and verify the backups

pt-ioprofile should be considered an intrusive tool, and should not be used
on production servers unless you understand and accept the risks.

=back

=head1 DESCRIPTION

pt-ioprofile uses C<strace> and C<lsof> to watch a process's IO and print out
a table of files and I/O activity.  By default, it watches the mysqld
process for 30 seconds.  The output is like:

  Tue Dec 27 15:33:57 PST 2011
  Tracing process ID 1833
       total       read      write      lseek  ftruncate filename
    0.000150   0.000029   0.000068   0.000038   0.000015 /tmp/ibBE5opS

You probably need to run this tool as root.

pt-ioprofile works by attaching C<strace> to the process using C<ptrace()>,
which will make it run very slowly until C<strace> detaches.  In addition to
freezing the server, there is some risk of the process crashing or performing
badly after C<strace> detaches from it, or of C<strace> not detaching cleanly
and leaving the process in a sleeping state.  As a result, this should be
considered an intrusive tool, and should not be used on production servers
unless you are comfortable with that.

=head1 OPTIONS

=over

=item --aggregate

short form: -a; type: string; default: sum

The aggregate function, either C<sum> or C<avg>.

If sum, then each cell will contain the sum of the values in it.
If avg, then each cell will contain the average of the values in it.

=item --cell

short form: -c; type: string; default: times

The cell contents.

Valid values are:

   VALUE  CELLS CONTAIN
   =====  =======================
   count  Count of I/O operations
   sizes  Sizes of I/O operations
   times  I/O operation timing

=item --group-by

short form: -g; type: string; default: filename

The group-by item.

Valid values are:

   VALUE     GROUPING
   =====     ======================================
   all       Summarize into a single line of output
   filename  One line of output per filename
   pid       One line of output per process ID

=item --help

Print help and exit.

=item --profile-pid

short form: -p; type: int

The PID to profile, overrides L<"--profile-process">.

=item --profile-process

short form: -b; type: string; default: mysqld

The process name to profile.

=item --run-time

type: int; default: 30

How long to profile.

=item --save-samples

type: string

Filename to save samples in; these can be used for later analysis.

=item --version

Print the tool's version and exit.

=back

=head1 ENVIRONMENT

This tool does not use any environment variables.

=head1 SYSTEM REQUIREMENTS

This tool requires the Bourne shell (F</bin/sh>).

=head1 BUGS

For a list of known bugs, see L<http://www.percona.com/bugs/pt-ioprofile>.

Please report bugs at L<https://bugs.launchpad.net/percona-toolkit>.
Include the following information in your bug report:

=over

=item * Complete command-line used to run the tool

=item * Tool L<"--version">

=item * MySQL version of all servers involved

=item * Output from the tool including STDERR

=item * Input files (log/dump/config files, etc.)

=back

If possible, include debugging output by running the tool with C<PTDEBUG>;
see L<"ENVIRONMENT">.

=head1 DOWNLOADING

Visit L<http://www.percona.com/software/percona-toolkit/> to download the
latest release of Percona Toolkit.  Or, get the latest release from the
command line:

   wget percona.com/get/percona-toolkit.tar.gz

   wget percona.com/get/percona-toolkit.rpm

   wget percona.com/get/percona-toolkit.deb

You can also get individual tools from the latest release:

   wget percona.com/get/TOOL

Replace C<TOOL> with the name of any tool.

=head1 AUTHORS

Baron Schwartz

=head1 ABOUT PERCONA TOOLKIT

This tool is part of Percona Toolkit, a collection of advanced command-line
tools for MySQL developed by Percona.  Percona Toolkit was forked from two
projects in June, 2011: Maatkit and Aspersa.  Those projects were created by
Baron Schwartz and primarily developed by him and Daniel Nichter.  Visit
L<http://www.percona.com/software/> to learn about other free, open-source
software from Percona.

=head1 COPYRIGHT, LICENSE, AND WARRANTY

This program is copyright 2011-2016 Percona LLC and/or its affiliates,
2010-2011 Baron Schwartz.

THIS PROGRAM IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESS OR IMPLIED
WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF
MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.

This program is free software; you can redistribute it and/or modify it under
the terms of the GNU General Public License as published by the Free Software
Foundation, version 2; OR the Perl Artistic License.  On UNIX and similar
systems, you can issue `man perlgpl' or `man perlartistic' to read these
licenses.

You should have received a copy of the GNU General Public License along with
this program; if not, write to the Free Software Foundation, Inc., 59 Temple
Place, Suite 330, Boston, MA  02111-1307  USA.

=head1 VERSION

pt-ioprofile 2.2.20

=cut

DOCUMENTATION