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1 2 3 4 5 6 7 | <html><head><meta http-equiv="Content-Type" content="text/html; charset=ISO-8859-1"><title>mia-2dseries2sets</title><link rel="stylesheet" type="text/css" href="progref.css"><meta name="generator" content="DocBook XSL Stylesheets V1.79.1"><link rel="home" href="index.html" title="Mia Program Reference"><link rel="up" href="SecToolsforMyocardialPerfusionAnalysis.html" title="Tools for Myocardial Perfusion Analysis"><link rel="prev" href="Secmia2dseries2dordermedian.html" title="mia-2dseries2dordermedian"><link rel="next" href="Secmia2dseriescorr.html" title="mia-2dseriescorr"></head><body bgcolor="white" text="black" link="#0000FF" vlink="#840084" alink="#0000FF"><div class="navheader"><table width="100%" summary="Navigation header"><tr><th colspan="3" align="center">mia-2dseries2sets</th></tr><tr><td width="20%" align="left"><a accesskey="p" href="Secmia2dseries2dordermedian.html">Prev</a> </td><th width="60%" align="center">Tools for Myocardial Perfusion Analysis</th><td width="20%" align="right"> <a accesskey="n" href="Secmia2dseriescorr.html">Next</a></td></tr></table><hr></div><div class="section"><div class="titlepage"><div><div><h3 class="title"><a name="Secmia2dseries2sets"></a>mia-2dseries2sets</h3></div></div></div><h4><a name="idp7637"></a>Sysnopis:</h4><div class="cmdsynopsis"><p><code class="command">mia-2dseries2sets</code> {-o <em class="replaceable"><code>string</code></em>} [
<em class="replaceable"><code>options</code></em>
...] [
<em class="replaceable"><code>
<a class="xref" href="SecPlugintype2dimageio.html" title="Plugin type: 2dimage/io">Plugin type: 2dimage/io</a>
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...]</p></div><h4><a name="idp7647"></a>Description:</h4><p>This program takes all image files that are given as free parameters on the command line and creates segmentation sets based on information found in the images. Used information is the z-location of the slice and the acquisition number. The code is taylored to used the according descriptors defined in the DICOM standard. All images with the same slice location will be grouped together in one segmentation set and ordered according to their acquisition number. Slice locations are rounded to three digits accuracy to make proper comparison of floating point values feasible.</p><h4><a name="idp7649"></a>Options:</h4><div class="variablelist"><dl class="variablelist compact"><dt><span class="term">-o, --out-directory=(output, required); string</span></dt><dd><p>output directory (needs to exist and be writable)</p></dd><dt><span class="term">--no-copy</span></dt><dd><p>don't copy image files to output directory</p></dd></dl></div><h4><a name="idp7659"></a>Help & Info</h4><div class="variablelist"><dl class="variablelist compact"><dt><span class="term">-V, --verbose=warning; dict</span></dt><dd><p>verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:</p><div class="informaltable"><table class="informaltable" border="0"><colgroup><col class="c1"><col class="c2"></colgroup><tbody><tr><td align="left" valign="top">info:</td><td align="left" valign="top">Low level messages</td></tr><tr><td align="left" valign="top">trace:</td><td align="left" valign="top">Function call trace</td></tr><tr><td align="left" valign="top">fail:</td><td align="left" valign="top">Report test failures</td></tr><tr><td align="left" valign="top">warning:</td><td align="left" valign="top">Warnings</td></tr><tr><td align="left" valign="top">error:</td><td align="left" valign="top">Report errors</td></tr><tr><td align="left" valign="top">debug:</td><td align="left" valign="top">Debug output</td></tr><tr><td align="left" valign="top">message:</td><td align="left" valign="top">Normal messages</td></tr><tr><td align="left" valign="top">fatal:</td><td align="left" valign="top">Report only fatal errors</td></tr></tbody></table></div></dd><dt><span class="term">--copyright=(); bool</span></dt><dd><p>print copyright information</p></dd><dt><span class="term">-h, --help=(); bool</span></dt><dd><p>print this help</p></dd><dt><span class="term">-?, --usage=(); bool</span></dt><dd><p>print a short help</p></dd><dt><span class="term">--version=(); bool</span></dt><dd><p>print the version number and exit</p></dd></dl></div><h4><a name="idp7710"></a>Processing</h4><div class="variablelist"><dl class="variablelist compact"><dt><span class="term">--threads=-1; int</span></dt><dd><p>Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).</p></dd></dl></div><h4><a name="idp7716"></a>Example:</h4><p>Create the segmentation sets from a series of DICOM images and copy the files to the output directory (copying is the default).</p><pre class="screen">mia-2dseries2sets -o /home/user/series /net/dicoms/patient1/series1/*.dcm</pre><h4><a name="idp7719"></a>Author(s):</h4><p>Gert Wollny</p></div><div class="navfooter"><hr><table width="100%" summary="Navigation footer"><tr><td width="40%" align="left"><a accesskey="p" href="Secmia2dseries2dordermedian.html">Prev</a> </td><td width="20%" align="center"><a accesskey="u" href="SecToolsforMyocardialPerfusionAnalysis.html">Up</a></td><td width="40%" align="right"> <a accesskey="n" href="Secmia2dseriescorr.html">Next</a></td></tr><tr><td width="40%" align="left" valign="top">mia-2dseries2dordermedian </td><td width="20%" align="center"><a accesskey="h" href="index.html">Home</a></td><td width="40%" align="right" valign="top"> mia-2dseriescorr</td></tr></table></div></body></html>
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