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1 2 3 | <html><head><meta http-equiv="Content-Type" content="text/html; charset=ISO-8859-1"><title>mia-2dsegshift</title><link rel="stylesheet" type="text/css" href="progref.css"><meta name="generator" content="DocBook XSL Stylesheets V1.79.1"><link rel="home" href="index.html" title="Mia Program Reference"><link rel="up" href="SecToolsforMyocardialPerfusionAnalysis.html" title="Tools for Myocardial Perfusion Analysis"><link rel="prev" href="Secmia2dsegseriesstats.html" title="mia-2dsegseriesstats"><link rel="next" href="Secmia2dsegshiftperslice.html" title="mia-2dsegshiftperslice"></head><body bgcolor="white" text="black" link="#0000FF" vlink="#840084" alink="#0000FF"><div class="navheader"><table width="100%" summary="Navigation header"><tr><th colspan="3" align="center">mia-2dsegshift</th></tr><tr><td width="20%" align="left"><a accesskey="p" href="Secmia2dsegseriesstats.html">Prev</a> </td><th width="60%" align="center">Tools for Myocardial Perfusion Analysis</th><td width="20%" align="right"> <a accesskey="n" href="Secmia2dsegshiftperslice.html">Next</a></td></tr></table><hr></div><div class="section"><div class="titlepage"><div><div><h3 class="title"><a name="Secmia2dsegshift"></a>mia-2dsegshift</h3></div></div></div><h4><a name="idp7063"></a>Sysnopis:</h4><div class="cmdsynopsis"><p><code class="command">mia-2dsegshift</code> {-i <em class="replaceable"><code>io</code></em>} {-o <em class="replaceable"><code>io</code></em>} [
<em class="replaceable"><code>options</code></em>
...]</p></div><h4><a name="idp7072"></a>Description:</h4><p>This program move the segmentation(s) of an image series by using a shift that is equal for all slices. The program also may remove images from the begin of the series. The program can be used to correct the segmentation of the images if the images where cropped.</p><h4><a name="idp7074"></a>Options:</h4><div class="variablelist"><dl class="variablelist compact"><dt><span class="term">-i, --in-file=(input, required); io</span></dt><dd><p>input segmentation set. For supported file types see <a class="xref" href="SecPlugintype2dimageio.html" title="Plugin type: 2dimage/io">Plugin type: 2dimage/io</a></p></dd><dt><span class="term">-o, --out-file=(output, required); io</span></dt><dd><p>input segmentation set. For supported file types see <a class="xref" href="SecPlugintype2dimageio.html" title="Plugin type: 2dimage/io">Plugin type: 2dimage/io</a></p></dd><dt><span class="term">-g, --image-file=crop; stringSTRING</span></dt><dd><p>output image filename base</p></dd><dt><span class="term">-S, --shift=[0,0]; 2dfvector</span></dt><dd><p>shift of segmentationshift of segmentation</p></dd><dt><span class="term">-k, --skip=2; ulong</span></dt><dd><p>skip frames at the beginningskip frames at the beginning</p></dd></dl></div><h4><a name="idp7098"></a>Help & Info</h4><div class="variablelist"><dl class="variablelist compact"><dt><span class="term">-V, --verbose=warning; dict</span></dt><dd><p>verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:</p><div class="informaltable"><table class="informaltable" border="0"><colgroup><col class="c1"><col class="c2"></colgroup><tbody><tr><td align="left" valign="top">info:</td><td align="left" valign="top">Low level messages</td></tr><tr><td align="left" valign="top">trace:</td><td align="left" valign="top">Function call trace</td></tr><tr><td align="left" valign="top">fail:</td><td align="left" valign="top">Report test failures</td></tr><tr><td align="left" valign="top">warning:</td><td align="left" valign="top">Warnings</td></tr><tr><td align="left" valign="top">error:</td><td align="left" valign="top">Report errors</td></tr><tr><td align="left" valign="top">debug:</td><td align="left" valign="top">Debug output</td></tr><tr><td align="left" valign="top">message:</td><td align="left" valign="top">Normal messages</td></tr><tr><td align="left" valign="top">fatal:</td><td align="left" valign="top">Report only fatal errors</td></tr></tbody></table></div></dd><dt><span class="term">--copyright=(); bool</span></dt><dd><p>print copyright information</p></dd><dt><span class="term">-h, --help=(); bool</span></dt><dd><p>print this help</p></dd><dt><span class="term">-?, --usage=(); bool</span></dt><dd><p>print a short help</p></dd><dt><span class="term">--version=(); bool</span></dt><dd><p>print the version number and exit</p></dd></dl></div><h4><a name="idp7149"></a>Processing</h4><div class="variablelist"><dl class="variablelist compact"><dt><span class="term">--threads=-1; int</span></dt><dd><p>Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).</p></dd></dl></div><h4><a name="idp7155"></a>Example:</h4><p>Shift the segmentations of a set segement.set by -20 pixels in horizontal direction and -30 pixels in vertical direction (as if the images where cropped starting at (20,30) and store it in translate.set. The shiftes files are named translatedXXXX.png</p><pre class="screen">mia-2dsegshift -i segment.set -o translate.set -g translated -S "<20,30>"</pre><h4><a name="idp7158"></a>Author(s):</h4><p>Gert Wollny</p></div><div class="navfooter"><hr><table width="100%" summary="Navigation footer"><tr><td width="40%" align="left"><a accesskey="p" href="Secmia2dsegseriesstats.html">Prev</a> </td><td width="20%" align="center"><a accesskey="u" href="SecToolsforMyocardialPerfusionAnalysis.html">Up</a></td><td width="40%" align="right"> <a accesskey="n" href="Secmia2dsegshiftperslice.html">Next</a></td></tr><tr><td width="40%" align="left" valign="top">mia-2dsegseriesstats </td><td width="20%" align="center"><a accesskey="h" href="index.html">Home</a></td><td width="40%" align="right" valign="top"> mia-2dsegshiftperslice</td></tr></table></div></body></html>
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