/usr/share/massxpert/pol-seqs/protein-3-letters.mxp is in massxpert-data 3.6.1-1.
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The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 | <?xml version="1.0"?>
<!-- DTD for polymer sequences, used by the
'massXtreme' mass spectrometry application.
Copyright 2006,2007 Filippo Rusconi - Licensed under the GNU GPL -->
<!DOCTYPE polseqdata [
<!ELEMENT polseqdata (polchemdef_name,name,code,author,datetime,polseq,le_modif?,re_modif?,prop*)>
<!ELEMENT polchemdef_name (#PCDATA)>
<!ELEMENT name (#PCDATA)>
<!ELEMENT code (#PCDATA)>
<!ELEMENT author (#PCDATA)>
<!ELEMENT datetime (#PCDATA)>
<!ELEMENT polseq (codes|monomer)*>
<!ELEMENT le_modif (#PCDATA)>
<!ELEMENT re_modif (#PCDATA)>
<!ELEMENT codes (#PCDATA)>
<!ELEMENT monomer (code, prop*)>
<!ELEMENT prop (name, data+)>
<!ATTLIST data type (str | int | dbl) "str">
<!ELEMENT data (#PCDATA)>
]>
<polseqdata>
<polchemdef_name>protein-3-letters</polchemdef_name>
<name>Protein Sample Polymer Sequence</name>
<code>SP2003</code>
<author>rusconi</author>
<datetime>2007-04-14:17:42</datetime>
<polseq>
<codes>AlaArgGluGlnGlyTrpMetAla</codes>
<monomer>
<code>Ser</code>
<prop>
<name>MODIF</name>
<data>Phosphorylation</data>
</prop>
</monomer>
<codes>AlaGluGlyTrpSer</codes>
<monomer>
<code>Lys</code>
<prop>
<name>MODIF</name>
<data>Acetylation</data>
</prop>
</monomer>
<codes>AlaAlaGluGlyTrpAlaGluGlyTrpAlaGluGlyTrp</codes>
<monomer>
<code>Arg</code>
<prop>
<name>MODIF</name>
<data>Acetylation</data>
</prop>
</monomer>
</polseq>
<le_modif>Acetylation</le_modif>
<re_modif>Phosphorylation</re_modif>
</polseqdata>
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