This file is indexed.

/usr/share/massxpert/dictionaries/codon-to-protein-1.dic is in massxpert-data 3.6.1-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
# Converts input code on the left of '>' to output code on the right.

# Number of letters allowed in each code is described with syntax i>o
# (input>output).

3>1

# Uncomment strictCodeLength if the input codes must have the exact
# number of characters as given by the i>o directive.

strictCodeLength

# Uncomment if the input monomer codes must abide by the rule that the
# first character is uppercase and the following ones are
# lowercase. This directive does *not* apply when strictCodeLength is
# not set (as the case of the characters are the only hint as to which
# length the code is actually.

#strictCodeCase

GCT>A
GCC>A
GCA>A
GCG>A
TGT>C
TGC>C
GAT>D
GAC>D
GAA>E
GAG>E
TTT>F
TTC>F
GGT>G
GGC>G
GGA>G
GGG>G
CAT>H
CAC>H
ATT>I
ATC>I
ATA>I
AAA>K
AAG>K
TTA>L
TTG>L
CTT>L
CTC>L
CTA>L
CTG>L
ATG>M
AAT>N
AAC>N
CCT>P
CCC>P
CCA>P
CCG>P
CAA>Q
CAG>Q
CGT>R
CGC>R
CGA>R
CGG>R
AGT>S
AGC>S
ACT>T
ACC>T
ACA>T
ACG>T
GTT>V
GTC>V
GTA>V
GTG>V
TGG>W
TAT>Y
TAC>Y