/usr/include/seqan/basic.h is in libseqan2-dev 2.3.1+dfsg-4.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 | // ==========================================================================
// SeqAn - The Library for Sequence Analysis
// ==========================================================================
// Copyright (c) 2006-2016, Knut Reinert, FU Berlin
// All rights reserved.
//
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions are met:
//
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of Knut Reinert or the FU Berlin nor the names of
// its contributors may be used to endorse or promote products derived
// from this software without specific prior written permission.
//
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL KNUT REINERT OR THE FU BERLIN BE LIABLE
// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
// DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
// SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
// CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
// LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
// OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
// DAMAGE.
//
// ==========================================================================
// Umbrella header for the basic module.
// ==========================================================================
#ifndef SEQAN_INCLUDE_SEQAN_BASIC_H_
#define SEQAN_INCLUDE_SEQAN_BASIC_H_
// --------------------------------------------------------------------------
// Prerequisites
// --------------------------------------------------------------------------
#include <seqan/platform.h>
// --------------------------------------------------------------------------
// Include Sub Modules
// --------------------------------------------------------------------------
// Code for debugging and testing (assertions, test system) and profiling.
#include <seqan/basic/basic_debug.h>
// C++ Metaprogramming Support Code, generally independent of SeqAn.
#include <seqan/basic/basic_metaprogramming.h>
// Basic functors.
#include <seqan/basic/basic_functors.h>
// Fundamental meta and global functions. This is what makes SeqAn SeqAn.
#include <seqan/basic/basic_fundamental.h>
// Basic exceptions.
#include <seqan/basic/basic_exception.h>
// More advanced debug system constructs.
// TODO(holtgrew): Move into basic_debug subsystem, some stuff from metaprogramming and fundamental required, those should not depend on debug system.
#include <seqan/basic/test_system.h>
// SeqAn Concept Checking Library (ported from Boost).
#include <seqan/basic/basic_concept.h>
// Container concept and supporting code.
#include <seqan/basic/basic_container.h>
// Memory allocation code.
#include <seqan/basic/basic_allocator.h>
// High level parallelism support.
#include <seqan/basic/basic_parallelism.h>
// Mathematical functions and utilities.
#include <seqan/basic/basic_math.h>
// Smart pointers, including Holder<> class hierarchy.
#include <seqan/basic/basic_smart_pointer.h>
// Iterator concept and implementation.
#include <seqan/basic/basic_iterator.h>
// Functions to efficiently move data between containers/iterators/streams
#include <seqan/basic/basic_stream.h>
// Alphabet concept and biological implementations.
#include <seqan/basic/basic_alphabet.h>
// Proxy class and supporting code.
#include <seqan/basic/basic_proxy.h>
// Aggregate data types (pairs, triples, tuples).
#include <seqan/basic/basic_aggregate.h>
// Remaining code with cyclic dependencies.
#include <seqan/basic/basic_tangle.h>
// Basic views functions and metafunctions.
#include <seqan/basic/basic_view.h>
// Basic device metafunctions.
#include <seqan/basic/basic_device.h>
// Basic SIMD vector implementation using intrinsics.
#include <seqan/basic/basic_simd_vector.h>
#endif // #ifndef SEQAN_INCLUDE_SEQAN_BASIC_H_
|