This file is indexed.

/usr/include/dune/localfunctions/hierarchical/hierarchicalprismp2/hierarchicalprismp2localbasis.hh is in libdune-localfunctions-dev 2.5.0-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
// -*- tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 2 -*-
// vi: set et ts=4 sw=2 sts=2:
#ifndef DUNE_HIERARCHICAL_PRISM_P2_LOCALBASIS_HH
#define DUNE_HIERARCHICAL_PRISM_P2_LOCALBASIS_HH

/** \file
    \brief Hierarchical prism p2 shape functions for the simplex
 */

#include <numeric>

#include <dune/common/fvector.hh>
#include <dune/common/fmatrix.hh>

#include <dune/localfunctions/common/localbasis.hh>

namespace Dune
{
  template<class D, class R>
  class HierarchicalPrismP2LocalBasis
  {
  public:
    //! \brief export type traits for function signature
    typedef LocalBasisTraits<D,3,Dune::FieldVector<D,3>,R,1,Dune::FieldVector<R,1>, Dune::FieldMatrix<R,1,3> > Traits;

    //! \brief number of shape functions
    unsigned int size () const
    {
      return 18;
    }

    //! \brief Evaluate all shape functions
    void evaluateFunction (const typename Traits::DomainType& in,
                           std::vector<typename Traits::RangeType> & out) const
    {
      out.resize(18);

      out[0]=(1.0-in[0]-in[1])*(1.0-in[2]);
      out[1]= in[0]*(1-in[2]);
      out[2]=in[1]*(1-in[2]);
      out[3]=in[2]*(1.0-in[0]-in[1]);
      out[4]=in[0]*in[2];
      out[5]=in[1]*in[2];

      //edges
      out[6]=2*(1.0-in[0]-in[1])*(0.5-in[0]-in[1])*(4*in[2]-4*in[2]*in[2]);
      out[7]=2*in[0]*(-0.5+in[0])*(4*in[2]-4*in[2]*in[2]);
      out[8]=2*in[1]*(-0.5+in[1])*(4*in[2]-4*in[2]*in[2]);
      out[9]=4*in[0]*(1-in[0]-in[1])*(1-3*in[2]+2*in[2]*in[2]);
      out[10]=4*in[1]*(1-in[0]-in[1])*(1-3*in[2]+2*in[2]*in[2]);
      out[11]=4*in[0]*in[1]*(1-3*in[2]+2*in[2]*in[2]);
      out[12]=4*in[0]*(1-in[0]-in[1])*(-in[2]+2*in[2]*in[2]);
      out[13]=4*in[1]*(1-in[0]-in[1])*(-in[2]+2*in[2]*in[2]);
      out[14]=4*in[0]*in[1]*(-in[2]+2*in[2]*in[2]);

      //faces
      out[15]=4*in[0]*(1-in[0]-in[1])*(4*in[2]-4*in[2]*in[2]);
      out[16]=4*in[1]*(1-in[0]-in[1])*(4*in[2]-4*in[2]*in[2]);
      out[17]=4*in[0]*in[1]*(4*in[2]-4*in[2]*in[2]);
    }



    //! \brief Evaluate Jacobian of all shape functions
    void evaluateJacobian (const typename Traits::DomainType& in,     //position
                           std::vector<typename Traits::JacobianType>& out) const  //return  value
    {
      out.resize(18);

      //vertices
      out[0][0][0] = in[2]-1;
      out[0][0][1] = in[2]-1;
      out[0][0][2] = in[0]+in[1]-1;

      out[1][0][0] = 1-in[2];
      out[1][0][1] = 0;
      out[1][0][2] =-in[0];

      out[2][0][0] = 0;
      out[2][0][1] = 1-in[2];
      out[2][0][2] = -in[1];

      out[3][0][0] = -in[2];
      out[3][0][1] = -in[2];
      out[3][0][2] = 1-in[0]-in[1];

      out[4][0][0] = in[2];
      out[4][0][1] = 0;
      out[4][0][2] = in[0];

      out[5][0][0] = 0;
      out[5][0][1] = in[2];
      out[5][0][2] = in[1];

      //edges
      out[6][0][0] = (-3+4*in[0]+4*in[1])*(4*in[2]-4*in[2]*in[2]);
      out[6][0][1] = (-3+4*in[0]+4*in[1])*(4*in[2]-4*in[2]*in[2]);
      out[6][0][2] = 2*(1-in[0]-in[1])*(0.5-in[0]-in[1])*(4-8*in[2]);

      out[7][0][0] = (-1+4*in[0])*(4*in[2]-4*in[2]*in[2]);
      out[7][0][1] = 0;
      out[7][0][2] = 2*in[0]*(-0.5+in[0])*(4-8*in[2]);

      out[8][0][0] = 0;
      out[8][0][1] = (-1+4*in[1])*(4*in[2]-4*in[2]*in[2]);
      out[8][0][2] = 2*in[1]*(-0.5+in[1])*(4-8*in[2]);

      out[9][0][0] = (4-8*in[0]-4*in[1])*(1-3*in[2]+2*in[2]*in[2]);
      out[9][0][1] = -4*in[0]*(1-3*in[2]+2*in[2]*in[2]);
      out[9][0][2] = 4*in[0]*(1-in[0]-in[1])*(-3+4*in[2]);

      out[10][0][0] = (-4*in[1])*(1-3*in[2]+2*in[2]*in[2]);
      out[10][0][1] = (4-4*in[0]-8*in[1])*(1-3*in[2]+2*in[2]*in[2]);
      out[10][0][2] = 4*in[1]*(1-in[0]-in[1])*(-3+4*in[2]);

      out[11][0][0] = 4*in[1]*(1-3*in[2]+2*in[2]*in[2]);
      out[11][0][1] = 4*in[0]*(1-3*in[2]+2*in[2]*in[2]);
      out[11][0][2] = 4*in[0]*in[1]*(-3+4*in[2]);

      out[12][0][0] = (4-8*in[0]-4*in[1])*(-in[2]+2*in[2]*in[2]);
      out[12][0][1] = (-4*in[0])*(-in[2]+2*in[2]*in[2]);
      out[12][0][2] = 4*in[0]*(1-in[0]-in[1])*(-1+4*in[2]);

      out[13][0][0] = -4*in[1]*(-in[2]+2*in[2]*in[2]);
      out[13][0][1] = (4-4*in[0]-8*in[1])*(-in[2]+2*in[2]*in[2]);
      out[13][0][2] = 4*in[1]*(1-in[0]-in[1])*(-1+4*in[2]);

      out[14][0][0] = 4*in[1]*(-in[2]+2*in[2]*in[2]);
      out[14][0][1] = 4*in[0]*(-in[2]+2*in[2]*in[2]);
      out[14][0][2] = 4*in[0]*in[1]*(-1+4*in[2]);

      //faces
      out[15][0][0] = (4-8*in[0]-4*in[1])*(4*in[2]-4*in[2]*in[2]);
      out[15][0][1] = -4*in[0]*(4*in[2]-4*in[2]*in[2]);
      out[15][0][2] = 4*in[0]*(1-in[0]-in[1])*(4-8*in[2]);

      out[16][0][0] = -4*in[1]*(4*in[2]-4*in[2]*in[2]);
      out[16][0][1] = (4-4*in[0]-8*in[1])*(4*in[2]-4*in[2]*in[2]);
      out[16][0][2] = 4*in[1]*(1-in[0]-in[1])*(4-8*in[2]);

      out[17][0][0] = 4*in[1]*(4*in[2]-4*in[2]*in[2]);
      out[17][0][1] = 4*in[0]*(4*in[2]-4*in[2]*in[2]);
      out[17][0][2] = 4*in[0]*in[1]*(4-8*in[2]);
    }

    //! \brief Evaluate partial derivatives of all shape functions
    void partial (const std::array<unsigned int, 3>& order,
                  const typename Traits::DomainType& in,         // position
                  std::vector<typename Traits::RangeType>& out) const      // return value
    {
      auto totalOrder = std::accumulate(order.begin(), order.end(), 0);
      if (totalOrder == 0) {
        evaluateFunction(in, out);
      } else if (totalOrder == 1) {
        out.resize(size());
        auto const direction = std::distance(order.begin(), std::find(order.begin(), order.end(), 1));

        switch (direction) {
        case 0:
          out[0]  = in[2]-1;
          out[1]  = 1-in[2];
          out[2]  = 0;
          out[3]  = -in[2];
          out[4]  = in[2];
          out[5]  = 0;
          out[6]  = (-3+4*in[0]+4*in[1])*(4*in[2]-4*in[2]*in[2]);
          out[7]  = (-1+4*in[0])*(4*in[2]-4*in[2]*in[2]);
          out[8]  = 0;
          out[9]  = (4-8*in[0]-4*in[1])*(1-3*in[2]+2*in[2]*in[2]);
          out[10] = (-4*in[1])*(1-3*in[2]+2*in[2]*in[2]);
          out[11] = 4*in[1]*(1-3*in[2]+2*in[2]*in[2]);
          out[12] = (4-8*in[0]-4*in[1])*(-in[2]+2*in[2]*in[2]);
          out[13] = -4*in[1]*(-in[2]+2*in[2]*in[2]);
          out[14] = 4*in[1]*(-in[2]+2*in[2]*in[2]);
          out[15] = (4-8*in[0]-4*in[1])*(4*in[2]-4*in[2]*in[2]);
          out[16] = -4*in[1]*(4*in[2]-4*in[2]*in[2]);
          out[17] = 4*in[1]*(4*in[2]-4*in[2]*in[2]);
          break;
        case 1:
          out[0]  = in[2]-1;
          out[1]  = 0;
          out[2]  = 1-in[2];
          out[3]  = -in[2];
          out[4]  = 0;
          out[5]  = in[2];
          out[6]  = (-3+4*in[0]+4*in[1])*(4*in[2]-4*in[2]*in[2]);
          out[7]  = 0;
          out[8]  = (-1+4*in[1])*(4*in[2]-4*in[2]*in[2]);
          out[9]  = -4*in[0]*(1-3*in[2]+2*in[2]*in[2]);
          out[10] = (4-4*in[0]-8*in[1])*(1-3*in[2]+2*in[2]*in[2]);
          out[11] = 4*in[0]*(1-3*in[2]+2*in[2]*in[2]);
          out[12] = (-4*in[0])*(-in[2]+2*in[2]*in[2]);
          out[13] = (4-4*in[0]-8*in[1])*(-in[2]+2*in[2]*in[2]);
          out[14] = 4*in[0]*(-in[2]+2*in[2]*in[2]);
          out[15] = -4*in[0]*(4*in[2]-4*in[2]*in[2]);
          out[16] = (4-4*in[0]-8*in[1])*(4*in[2]-4*in[2]*in[2]);
          out[17] = 4*in[0]*(4*in[2]-4*in[2]*in[2]);
          break;
        case 2:
          out[0]  = in[0]+in[1]-1;
          out[1]  =-in[0];
          out[2]  = -in[1];
          out[3]  = 1-in[0]-in[1];
          out[4]  = in[0];
          out[5]  = in[1];
          out[6]  = 2*(1-in[0]-in[1])*(0.5-in[0]-in[1])*(4-8*in[2]);
          out[7]  = 2*in[0]*(-0.5+in[0])*(4-8*in[2]);
          out[8]  = 2*in[1]*(-0.5+in[1])*(4-8*in[2]);
          out[9]  = 4*in[0]*(1-in[0]-in[1])*(-3+4*in[2]);
          out[10] = 4*in[1]*(1-in[0]-in[1])*(-3+4*in[2]);
          out[11] = 4*in[0]*in[1]*(-3+4*in[2]);
          out[12] = 4*in[0]*(1-in[0]-in[1])*(-1+4*in[2]);
          out[13] = 4*in[1]*(1-in[0]-in[1])*(-1+4*in[2]);
          out[14] = 4*in[0]*in[1]*(-1+4*in[2]);
          out[15] = 4*in[0]*(1-in[0]-in[1])*(4-8*in[2]);
          out[16] = 4*in[1]*(1-in[0]-in[1])*(4-8*in[2]);
          out[17] = 4*in[0]*in[1]*(4-8*in[2]);
          break;
        default:
          DUNE_THROW(RangeError, "Component out of range.");
        }
      } else {
        DUNE_THROW(NotImplemented, "Desired derivative order is not implemented");
      }
    }

    /** \brief Polynomial order of the shape functions
     */
    unsigned int order() const
    {
      return 2;
    }

  };
}
#endif