This file is indexed.

/usr/bin/fcm_internal is in fcm 2016.12.0-1.

This file is owned by root:root, with mode 0o755.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
#!/usr/bin/env perl
#-------------------------------------------------------------------------------
# (C) British Crown Copyright 2006-16 Met Office.
#
# This file is part of FCM, tools for managing and building source code.
#
# FCM is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# FCM is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with FCM. If not, see <http://www.gnu.org/licenses/>.
#-------------------------------------------------------------------------------

use strict;
use warnings;

use FCM1::Timer qw{timestamp_command};

# Function declarations
sub catfile;
sub basename;
sub dirname;

# ------------------------------------------------------------------------------

# Module level variables
my %unusual_tool_name = ();

# ------------------------------------------------------------------------------

MAIN: {
  # Name of program
  my $this = basename $0;

  # Arguments
  my $subcommand = shift @ARGV;
  my ($function, $type) = split /:/, $subcommand; 

  my ($srcpackage, $src, $target, $requirepp, @objects, @blockdata);
  
  if ($function eq 'archive') {
    ($target, @objects) = @ARGV;

  } elsif ($function eq 'load') {
    ($srcpackage, $src, $target, @blockdata) = @ARGV;

  } else {
    ($srcpackage, $src, $target, $requirepp) = @ARGV;
  }

  # Set up hash reference for all the required information
  my %info = (
    SRCPACKAGE => $srcpackage,
    SRC        => $src,
    TYPE       => $type,
    TARGET     => $target,
    REQUIREPP  => $requirepp,
    OBJECTS    => \@objects,
    BLOCKDATA  => \@blockdata,
  );

  # Get list of unusual tools
  my $i = 0;
  while (my $label = &get_env ('FCM_UNUSUAL_TOOL_LABEL' . $i)) {
    my $value = &get_env ('FCM_UNUSUAL_TOOL_VALUE' . $i);
    $unusual_tool_name{$label} = $value;
    $i++;
  }

  # Invoke the action
  my $rc = 0;
  if ($function eq 'compile') {
    $rc = &compile (\%info);

  } elsif ($function eq 'load') {
    $rc = &load (\%info);

  } elsif ($function eq 'archive') {
    $rc = &archive (\%info);

  } else {
    print STDERR $this, ': incorrect usage, abort';
    $rc = 1;
  }

  # Throw error if action failed
  if ($rc) {
    print STDERR $this, ' ', $function, ' failed (', $rc, ')', "\n";
    exit 1;

  } else {
    exit;
  }
}

# ------------------------------------------------------------------------------
# SYNOPSIS
#   $rc = &compile (\%info);
#
# DESCRIPTION
#   This method invokes the correct compiler with the correct options to
#   compile the source file into the required target. The argument $info is a
#   hash reference set up in MAIN. The following environment variables are
#   used, where * is the source file type (F for Fortran, and C for C/C++):
# 
#   *C          - compiler command
#   *C_OUTPUT   - *C option to specify the name of the output file
#   *C_DEFINE   - *C option to declare a pre-processor def
#   *C_INCLUDE  - *C option to declare an include directory
#   *C_MODSEARCH- *C option to declare a module search directory
#   *C_COMPILE  - *C option to ask the compiler to perform compile only
#   *CFLAGS     - *C user options
#   *PPKEYS     - list of pre-processor defs (may have sub-package suffix)
#   FCM_VERBOSE - verbose level
#   FCM_OBJDIR  - destination directory of object file
#   FCM_TMPDIR  - temporary destination directory of object file
# ------------------------------------------------------------------------------

sub compile {
  my $info = shift;

  # Verbose mode
  my $verbose = &get_env ('FCM_VERBOSE');
  $verbose    = 1 unless defined ($verbose);

  my @command = ();

  # Guess file type for backward compatibility
  my $type = $info->{TYPE} ? $info->{TYPE} : &guess_file_type ($info->{SRC});

  # Compiler
  push @command, &get_env ($type . 'C', 1);

  # Compile output target (typical -o option)
  push @command, &get_env ($type . 'C_OUTPUT', 1), $info->{TARGET};

  # Pre-processor definition macros
  if ($info->{REQUIREPP}) {
    my @ppkeys = split /\s+/, &select_flags ($info, $type . 'PPKEYS');
    my $defopt = &get_env ($type . 'C_DEFINE', 1);

    push @command, (map {$defopt . $_} @ppkeys);
  }

  # Include search path
  my $incopt  = &get_env ($type . 'C_INCLUDE', 1);
  my @incpath = split /:/, &get_env ('FCM_INCPATH');
  push @command, (map {$incopt . $_} @incpath);

  # Compiled module search path
  my $modopt  = &get_env ($type . 'C_MODSEARCH');
  if ($modopt) {
    push @command, (map {$modopt . $_} @incpath);
  }

  # Other compiler flags
  my $flags = &select_flags ($info, $type . 'FLAGS');
  push @command, $flags if $flags;

  my $compile_only = &get_env ($type . 'C_COMPILE');
  if ($flags !~ /(?:^|\s)$compile_only\b/) {
    push @command, &get_env ($type . 'C_COMPILE');
  }

  # Name of source file
  push @command, $info->{SRC};

  # Execute command
  my $objdir = &get_env ('FCM_OBJDIR', 1);
  my $tmpdir = &get_env ('FCM_TMPDIR', 1);
  chdir $tmpdir;

  my $command = join ' ', @command;
  if ($verbose > 1) {
    print 'cd ', $tmpdir, "\n";
    print &timestamp_command ($command, 'Start');

  } elsif ($verbose) {
    print $command, "\n";
  }

  my $rc = system $command;

  print &timestamp_command ($command, 'End  ') if $verbose > 1;

  # Move temporary output to correct location on success
  # Otherwise, remove temporary output
  if ($rc) { # error
    unlink $info->{TARGET};

  } else {   # success
    print 'mv ', $info->{TARGET}, ' ', $objdir, "\n" if $verbose > 1;
    rename $info->{TARGET}, &catfile ($objdir, $info->{TARGET});
  }

  # Move any Fortran module definition files to the INC directory
  my @modfiles = <*.mod *.MOD>;
  for my $file (@modfiles) {
    rename $file, &catfile ($incpath[0], $file);
  }

  return $rc;
}

# ------------------------------------------------------------------------------
# SYNOPSIS
#   $rc = &load (\%info);
#
# DESCRIPTION
#   This method invokes the correct loader with the correct options to link
#   the main program object into an executable. The argument $info is a hash
#   reference set up in MAIN. The following environment variables are used:
# 
#   LD           - * linker command
#   LD_OUTPUT    - LD option to specify the name of the output file
#   LD_LIBSEARCH - LD option to declare a directory in the library search path
#   LD_LIBLINK   - LD option to declare an object library
#   LDFLAGS      - LD user options
#   FCM_VERBOSE  - verbose level
#   FCM_LIBDIR   - destination directory of object libraries
#   FCM_OBJDIR   - destination directory of object files
#   FCM_BINDIR   - destination directory of executable file
#   FCM_TMPDIR   - temporary destination directory of executable file
#
#   * If LD is not set, it will attempt to guess the file type and use the
#     compiler as the linker.
# ------------------------------------------------------------------------------

sub load {
  my $info = shift;

  my $rc = 0;

  # Verbose mode
  my $verbose = &get_env ('FCM_VERBOSE');
  $verbose    = 1 unless defined ($verbose);

  # Create temporary object library
  (my $name   = $info->{TARGET}) =~ s/\.\S+$//;
  my $libname = '__fcm__' . $name;
  my $lib     = 'lib' . $libname . '.a';
  my $libfile = catfile (&get_env ('FCM_LIBDIR', 1), $lib);
  $rc = &archive ({TARGET => $lib});

  unless ($rc) {
    my @command = ();

    # Linker
    my $ld = &select_flags ($info, 'LD');
    if (not $ld) {
      # Guess file type for backward compatibility
      my $type = $info->{TYPE} ? $info->{TYPE} : &guess_file_type ($info->{SRC});
      $ld = &get_env ($type . 'C', 1);
    }
    push @command, $ld;

    # Linker output target (typical -o option)
    push @command, &get_env ('LD_OUTPUT', 1), $info->{TARGET};

    # Name of main object file
    my $mainobj = (basename ($info->{SRC}) eq $info->{SRC})
                  ? catfile (&get_env ('FCM_OBJDIR'), $info->{SRC})
                  : $info->{SRC};
    push @command, $mainobj;

    # Link with Fortran BLOCKDATA objects if necessary
    if (@{ $info->{BLOCKDATA} }) {
      my @blockdata = @{ $info->{BLOCKDATA} };
      my @objpath   = split /:/, &get_env ('FCM_OBJPATH');

      # Search each BLOCKDATA object file from the object search path
      for my $file (@blockdata) {
        for my $dir (@objpath) {
          my $full = catfile ($dir, $file);

          if (-f $full) {
            $file = $full;
            last;
          }
        }

        push @command, $file;
      }
    }

    # Library search path
    my $libopt  = &get_env ('LD_LIBSEARCH', 1);
    my @libpath = split /:/, &get_env ('FCM_LIBPATH');
    push @command, (map {$libopt . $_} @libpath);

    # Link with temporary object library if it exists
    push @command, &get_env ('LD_LIBLINK', 1) . $libname if -f $libfile;

    # Other linker flags
    my $flags = &select_flags ($info, 'LDFLAGS');
    push @command, $flags;

    # Execute command
    my $tmpdir = &get_env ('FCM_TMPDIR', 1);
    my $bindir = &get_env ('FCM_BINDIR', 1);
    chdir $tmpdir;

    my $command = join ' ', @command;
    if ($verbose > 1) {
      print 'cd ', $tmpdir, "\n";
      print &timestamp_command ($command, 'Start');

    } elsif ($verbose) {
      print $command, "\n";
    }

    $rc = system $command;

    print &timestamp_command ($command, 'End  ') if $verbose > 1;

    # Move temporary output to correct location on success
    # Otherwise, remove temporary output
    if ($rc) { # error
      unlink $info->{TARGET};

    } else {   # success
      print 'mv ', $info->{TARGET}, ' ', $bindir, "\n" if $verbose > 1;
      rename $info->{TARGET}, &catfile ($bindir, $info->{TARGET});
    }
  }

  # Remove the temporary object library
  unlink $libfile if -f $libfile;

  return $rc;
}

# ------------------------------------------------------------------------------
# SYNOPSIS
#   $rc = &archive (\%info);
#
# DESCRIPTION
#   This method invokes the library archiver to create an object library. The
#   argument $info is a hash reference set up in MAIN. The following
#   environment variables are used:
# 
#   AR           - archiver command
#   ARFLAGS      - AR options to update/create an object library
#   FCM_VERBOSE  - verbose level
#   FCM_LIBDIR   - destination directory of object libraries
#   FCM_OBJPATH  - search path of object files
#   FCM_OBJDIR   - destination directory of object files
#   FCM_TMPDIR   - temporary destination directory of executable file
# ------------------------------------------------------------------------------

sub archive {
  my $info = shift;

  my $rc = 0;

  # Verbose mode
  my $verbose = &get_env ('FCM_VERBOSE');
  $verbose    = 1 unless defined ($verbose);

  # Set up the archive command
  my $lib     = &basename ($info->{TARGET});
  my $tmplib  = &catfile (&get_env ('FCM_TMPDIR', 1), $lib);
  my @ar_cmd  = ();
  push @ar_cmd, (&get_env ('AR', 1), &get_env ('ARFLAGS', 1));
  push @ar_cmd, $tmplib;

  # Get object directories and their files
  my %objdir;
  if (exists $info->{OBJECTS}) {
    # List of objects set in the argument, sort into directory/file list
    for my $name (@{ $info->{OBJECTS} }) {
      my $dir = (&dirname ($name) eq '.')
                ? &get_env ('FCM_OBJDIR', 1) : &dirname ($name);
      $objdir{$dir}{&basename ($name)} = 1;
    }

  } else {
    # Objects not listed in argument, search object path for all files
    my @objpath  = split /:/, &get_env ('FCM_OBJPATH', 1);
    my %objbase  = ();

    # Get registered objects into a hash (keys = objects, values = 1)
    
    my %objects = map {($_, 1)} split (/\s+/, &get_env ('OBJECTS', 1));

    # Seach object path for all files
    for my $dir (@objpath) {
      next unless -d $dir;

      chdir $dir;

      # Use all files from each directory in the object search path
      for ((glob ('*'))) {
        next unless exists $objects{$_}; # consider registered objects only
        $objdir{$dir}{$_} = 1 unless exists $objbase{$_};
        $objbase{$_} = 1;
      }
    }
  }

  for my $dir (sort keys %objdir) {
    next unless -d $dir;

    # Go to each object directory and executes the library archive command 
    chdir $dir;
    my $command = join ' ', (@ar_cmd, sort keys %{ $objdir{$dir} });

    if ($verbose > 1) {
      print 'cd ', $dir, "\n";
      print &timestamp_command ($command, 'Start');

    } else {
      print $command, "\n" if exists $info->{OBJECTS};
    }

    $rc = system $command;

    print &timestamp_command ($command, 'End  ')
      if $verbose > 1;
    last if $rc;
  }

  # Move temporary output to correct location on success
  # Otherwise, remove temporary output
  if ($rc) { # error
    unlink $tmplib;

  } else {   # success
    my $libdir = &get_env ('FCM_LIBDIR', 1);

    print 'mv ', $tmplib, ' ', $libdir, "\n" if $verbose > 1;
    rename $tmplib, &catfile ($libdir, $lib);
  }

  return $rc;
}

# ------------------------------------------------------------------------------
# SYNOPSIS
#   $type = &guess_file_type ($filename);
#
# DESCRIPTION
#   This function attempts to guess the file type by looking at the extension
#   of the $filename. Only C and Fortran at the moment.
# ------------------------------------------------------------------------------

sub guess_file_type {
  return (($_[0] =~ /\.c(\w+)?$/i) ? 'C' : 'F');
}

# ------------------------------------------------------------------------------
# SYNOPSIS
#   $flags = &select_flags (\%info, $set);
#
# DESCRIPTION
#   This function selects the correct compiler/linker flags for the current
#   sub-package from the environment variable prefix $set. The argument $info
#   is a hash reference set up in MAIN.
# ------------------------------------------------------------------------------

sub select_flags {
  my ($info, $set) = @_;

  my $srcbase = &basename ($info->{SRC});
  my @names    = ($set);
  push @names, split (/__/, $info->{SRCPACKAGE} . '__' . $srcbase);

  my $string = '';
  for my $i (reverse (0 .. $#names)) {
    my $var  = &get_env (join ('__', (@names[0 .. $i])));

    $var = &get_env (join ('__', (@names[0 .. $i])))
      if (not defined ($var)) and $i and $names[-1] =~ s/\.[^\.]+$//;

    next unless defined $var;
    $string = $var;
    last;
  }

  return $string;
}

# ------------------------------------------------------------------------------
# SYNOPSIS
#   $variable = &get_env ($name);
#   $variable = &get_env ($name, $compulsory);
#
# DESCRIPTION
#   This internal method gets a variable from $ENV{$name}. If $compulsory is
#   set to true, it throws an error if the variable is a not set or is an empty
#   string. Otherwise, it returns C<undef> if the variable is not set.
# ------------------------------------------------------------------------------

sub get_env {
  (my $name, my $compulsory) = @_;
  my $string;

  if ($name =~ /^\w+$/) {
    # $name contains only word characters, variable is exported normally
    die 'The environment variable "', $name, '" must be set, abort'
      if $compulsory and not exists $ENV{$name};

    $string = exists $ENV{$name} ? $ENV{$name} : undef;

  } else {
    # $name contains unusual characters
    die 'The environment variable "', $name, '" must be set, abort'
      if $compulsory and not exists $unusual_tool_name{$name};

    $string = exists $unusual_tool_name{$name}
              ? $unusual_tool_name{$name} : undef;
  }

  return $string;
}

# ------------------------------------------------------------------------------
# SYNOPSIS
#   $path = &catfile (@paths);
#
# DESCRIPTION
#   This is a local implementation of what is in the File::Spec module.
# ------------------------------------------------------------------------------

sub catfile {
  my @names = split (m!/!, join ('/', @_));
  my $path  = shift @names;

  for my $name (@names) {
    $path .= '/' . $name if $name;
  }

  return $path;
}

# ------------------------------------------------------------------------------
# SYNOPSIS
#   $basename = &basename ($path);
#
# DESCRIPTION
#   This is a local implementation of what is in the File::Basename module.
# ------------------------------------------------------------------------------

sub basename {
  my $name = $_[0];

  $name =~ s{/*$}{}; # remove trailing slashes

  if ($name =~ m#.*/([^/]+)$#) {
    return $1;

  } else {
    return $name;
  }
}

# ------------------------------------------------------------------------------
# SYNOPSIS
#   $dirname = &dirname ($path);
#
# DESCRIPTION
#   This is a local implementation of what is in the File::Basename module.
# ------------------------------------------------------------------------------

sub dirname {
  my $name = $_[0];

  if ($name =~ m#^/+$#) {
    return '/'; # dirname of root is root

  } else {
    $name =~ s{/*$}{}; # remove trailing slashes

    if ($name =~ m#^(.*)/[^/]+$#) {
      my $dir = $1;
      $dir =~ s{/*$}{}; # remove trailing slashes
      return $dir;

    } else {
      return '.';
    }
  }
}

# ------------------------------------------------------------------------------

__END__

=head1 NAME

fcm_internal

=head1 SYNOPSIS

    fcm_internal SUBCOMMAND ARGS

=head1 DESCRIPTION

The fcm_internal command is a frontend for some of the internal commands of
the FCM build system. The subcommand can be "compile", "load" or "archive"
for invoking the compiler, loader and library archiver respectively. If
"compile" or "load" is specified, it can be suffixed with ":TYPE" to
specify the nature of the source file. If TYPE is not specified, it is set
to C if the file extension begins with ".c". For all other file types, it
is set to F (for Fortran source). For compile and load, the other arguments
are 1) the name of the container package of the source file, 2) the path to
the source file and 3) the target name after compiling or loading the
source file. For compile, the 4th argument is a flag to indicate whether
pre-processing is required for compiling the source file.  For load, the
4th and the rest of the arguments is a list of object files that cannot be
archived into the temporary load library and must be linked into the target
through the linker command. (E.g. Fortran BLOCKDATA program units must be
linked this way.) If archive is specified, the first argument should be the
name of the library archive target and the rest should be the object files
to be included in the archive. This command is invoked via the build system
and should never be called directly by the user.

=head1 COPYRIGHT

(C) Crown copyright Met Office. All rights reserved.

=cut