bioperl 1.7.1-2 in debian - stretch / main

About

This package is 411.8 KB. It is available at http://ftp.debian.org/debian/pool/main/b/bioperl/bioperl_1.7.1-2_all.deb .

View its full control file here: debian/control.

Description

Perl tools for computational molecular biology

Relations

Package Contents

File	Mime Type	Owner	Mode	Size
/usr/		root:root	0o755
/usr/bin/		root:root	0o755
/usr/bin/bp_aacomp	text/x-perl	root:root	0o755	2.7 KB
/usr/bin/bp_biofetch_genbank_proxy	text/x-perl	root:root	0o755	8.1 KB
/usr/bin/bp_bioflat_index	text/x-perl	root:root	0o755	3.5 KB
/usr/bin/bp_biogetseq	text/x-perl	root:root	0o755	1.5 KB
/usr/bin/bp_blast2tree	text/x-perl	root:root	0o755	4.6 KB
/usr/bin/bp_bulk_load_gff	text/x-perl	root:root	0o755	20.4 KB
/usr/bin/bp_chaos_plot	text/x-perl	root:root	0o755	4.2 KB
/usr/bin/bp_classify_hits_kingdom	text/x-perl	root:root	0o755	7.6 KB
/usr/bin/bp_composite_LD	text/x-perl	root:root	0o755	2.5 KB
/usr/bin/bp_das_server	text/x-perl	root:root	0o755	14.6 KB
/usr/bin/bp_dbsplit	text/x-perl	root:root	0o755	2.6 KB
/usr/bin/bp_download_query_genbank	text/x-perl	root:root	0o755	3.2 KB
/usr/bin/bp_extract_feature_seq	text/x-perl	root:root	0o755	2.7 KB
/usr/bin/bp_fastam9_to_table	text/x-perl	root:root	0o755	3.8 KB
/usr/bin/bp_fast_load_gff	text/x-perl	root:root	0o755	15.3 KB
/usr/bin/bp_fetch	text/x-perl	root:root	0o755	8.4 KB
/usr/bin/bp_filter_search	text/x-perl	root:root	0o755	1.7 KB
/usr/bin/bp_find-blast-matches	text/x-perl	root:root	0o755	14.7 KB
/usr/bin/bp_flanks	text/x-perl	root:root	0o755	9.1 KB
/usr/bin/bp_gccalc	text/x-perl	root:root	0o755	3.3 KB
/usr/bin/bp_genbank2gff	text/x-perl	root:root	0o755	10.1 KB
/usr/bin/bp_genbank2gff3	text/x-perl	root:root	0o755	78.0 KB
/usr/bin/bp_generate_histogram	text/x-perl	root:root	0o755	3.6 KB
/usr/bin/bp_heterogeneity_test	text/x-perl	root:root	0o755	4.6 KB
/usr/bin/bp_hivq	text/x-perl	root:root	0o755	14.8 KB
/usr/bin/bp_hmmer_to_table	text/x-perl	root:root	0o755	2.6 KB
/usr/bin/bp_index	text/x-perl	root:root	0o755	5.1 KB
/usr/bin/bp_load_gff	text/x-perl	root:root	0o755	6.0 KB
/usr/bin/bp_local_taxonomydb_query	text/x-perl	root:root	0o755	1.7 KB
/usr/bin/bp_make_mrna_protein	text/x-perl	root:root	0o755	3.1 KB
/usr/bin/bp_mask_by_search	text/x-perl	root:root	0o755	4.7 KB
/usr/bin/bp_meta_gff	text/x-perl	root:root	0o755	2.2 KB
/usr/bin/bp_mrtrans	text/x-perl	root:root	0o755	2.9 KB
/usr/bin/bp_mutate	text/x-perl	root:root	0o755	4.1 KB
/usr/bin/bp_netinstall	text/x-perl	root:root	0o755	13.4 KB
/usr/bin/bp_nexus2nh	text/x-perl	root:root	0o755	831 bytes
/usr/bin/bp_nrdb	text/x-perl	root:root	0o755	3.4 KB
/usr/bin/bp_oligo_count	text/x-perl	root:root	0o755	6.1 KB
/usr/bin/bp_pairwise_kaks	text/x-perl	root:root	0o755	6.1 KB
/usr/bin/bp_parse_hmmsearch	text/x-perl	root:root	0o755	6.4 KB
/usr/bin/bp_process_gadfly	text/x-perl	root:root	0o755	7.1 KB
/usr/bin/bp_process_sgd	text/x-perl	root:root	0o755	3.6 KB
/usr/bin/bp_process_wormbase	text/x-perl	root:root	0o755	7.5 KB
/usr/bin/bp_query_entrez_taxa	text/x-perl	root:root	0o755	2.6 KB
/usr/bin/bp_remote_blast	text/x-perl	root:root	0o755	4.7 KB
/usr/bin/bp_revtrans-motif	text/x-perl	root:root	0o755	23.8 KB
/usr/bin/bp_search2alnblocks	text/x-perl	root:root	0o755	4.0 KB
/usr/bin/bp_search2gff	text/x-perl	root:root	0o755	12.1 KB
/usr/bin/bp_search2table	text/x-perl	root:root	0o755	2.3 KB
/usr/bin/bp_search2tribe	text/x-perl	root:root	0o755	2.6 KB
/usr/bin/bp_seqconvert	text/x-perl	root:root	0o755	2.1 KB
/usr/bin/bp_seqcut	text/x-perl	root:root	0o755	3.6 KB
/usr/bin/bp_seqfeature_delete	text/x-perl	root:root	0o755	4.6 KB
/usr/bin/bp_seqfeature_gff3	text/x-perl	root:root	0o755	2.3 KB
/usr/bin/bp_seqfeature_load	text/x-perl	root:root	0o755	7.1 KB
/usr/bin/bp_seq_length	text/x-perl	root:root	0o755	1.6 KB
/usr/bin/bp_seqpart	text/x-perl	root:root	0o755	4.4 KB
/usr/bin/bp_seqret	text/x-perl	root:root	0o755	2.2 KB
/usr/bin/bp_seqretsplit	text/x-perl	root:root	0o755	1.4 KB
/usr/bin/bp_split_seq	text/x-perl	root:root	0o755	4.1 KB
/usr/bin/bp_sreformat	text/x-perl	root:root	0o755	5.7 KB
/usr/bin/bp_taxid4species	text/x-perl	root:root	0o755	3.1 KB
/usr/bin/bp_taxonomy2tree	text/x-perl	root:root	0o755	2.8 KB
/usr/bin/bp_translate_seq	text/x-perl	root:root	0o755	1.5 KB
/usr/bin/bp_tree2pag	text/x-perl	root:root	0o755	1.4 KB
/usr/bin/bp_unflatten_seq	text/x-perl	root:root	0o755	7.2 KB
/usr/share/		root:root	0o755
/usr/share/doc/		root:root	0o755
/usr/share/doc/bioperl/		root:root	0o755
/usr/share/doc/bioperl/AUTHORS.gz	application/gzip	root:root	0o644	2.7 KB
/usr/share/doc/bioperl/BUGS.gz	application/gzip	root:root	0o644	2.5 KB
/usr/share/doc/bioperl/changelog.Debian.gz	application/gzip	root:root	0o644	4.7 KB
/usr/share/doc/bioperl/changelog.gz	application/gzip	root:root	0o644	28.4 KB
/usr/share/doc/bioperl/copyright	text/plain	root:root	0o644	10.3 KB
/usr/share/doc/bioperl/DEPRECATED	text/plain	root:root	0o644	3.1 KB
/usr/share/doc/bioperl/examples/		root:root	0o755
/usr/share/doc/bioperl/examples/align/		root:root	0o755
/usr/share/doc/bioperl/examples/align/align_on_codons.pl.gz	application/gzip	root:root	0o644	1.9 KB
/usr/share/doc/bioperl/examples/align/aligntutorial.pl	text/x-perl	root:root	0o755	3.4 KB
/usr/share/doc/bioperl/examples/align/clustalw.pl.gz	application/gzip	root:root	0o644	3.2 KB
/usr/share/doc/bioperl/examples/align/FastAlign.pl.gz	application/gzip	root:root	0o644	2.6 KB
/usr/share/doc/bioperl/examples/align/simplealign.pl.gz	application/gzip	root:root	0o644	6.6 KB
/usr/share/doc/bioperl/examples/Bio-DB-GFF/		root:root	0o755
/usr/share/doc/bioperl/examples/Bio-DB-GFF/load_ucsc.pl.gz	application/gzip	root:root	0o644	3.0 KB
/usr/share/doc/bioperl/examples/bioperl.pl.gz	application/gzip	root:root	0o644	4.4 KB
/usr/share/doc/bioperl/examples/cluster/		root:root	0o755
/usr/share/doc/bioperl/examples/cluster/dbsnp.pl	text/x-perl	root:root	0o755	558 bytes
/usr/share/doc/bioperl/examples/contributed/		root:root	0o755
/usr/share/doc/bioperl/examples/contributed/nmrpdb_parse.pl.gz	application/gzip	root:root	0o644	1.8 KB
/usr/share/doc/bioperl/examples/contributed/prosite2perl.pl	text/x-perl	root:root	0o755	644 bytes
/usr/share/doc/bioperl/examples/contributed/rebase2list.pl	text/x-perl	root:root	0o755	549 bytes
/usr/share/doc/bioperl/examples/db/		root:root	0o755
/usr/share/doc/bioperl/examples/db/dbfetch.gz	application/gzip	root:root	0o644	6.3 KB
/usr/share/doc/bioperl/examples/db/est_tissue_query.pl.gz	application/gzip	root:root	0o644	2.1 KB
/usr/share/doc/bioperl/examples/db/gb2features.pl.gz	application/gzip	root:root	0o644	998 bytes
/usr/share/doc/bioperl/examples/db/getGenBank.pl	text/x-perl	root:root	0o755	785 bytes
/usr/share/doc/bioperl/examples/db/get_seqs.pl	text/x-perl	root:root	0o755	1.6 KB
/usr/share/doc/bioperl/examples/db/rfetch.pl	text/x-perl	root:root	0o755	1.3 KB
/usr/share/doc/bioperl/examples/db/use_registry.pl	text/x-perl	root:root	0o755	314 bytes
/usr/share/doc/bioperl/examples/generate_random_seq.pl	text/x-perl	root:root	0o755	2.4 KB
/usr/share/doc/bioperl/examples/liveseq/		root:root	0o755
/usr/share/doc/bioperl/examples/liveseq/change_gene.pl	text/x-perl	root:root	0o755	1.8 KB
/usr/share/doc/bioperl/examples/longorf.pl.gz	application/gzip	root:root	0o644	1.6 KB
/usr/share/doc/bioperl/examples/make_primers.pl.gz	application/gzip	root:root	0o644	1.8 KB
/usr/share/doc/bioperl/examples/popgen/		root:root	0o755
/usr/share/doc/bioperl/examples/popgen/parse_calc_stats.pl	text/x-perl	root:root	0o755	3.2 KB
/usr/share/doc/bioperl/examples/quality/		root:root	0o755
/usr/share/doc/bioperl/examples/quality/svgtrace.pl	text/x-perl	root:root	0o755	1.5 KB
/usr/share/doc/bioperl/examples/rev_and_trans.pl	text/x-perl	root:root	0o755	1.1 KB
/usr/share/doc/bioperl/examples/revcom_dir.pl	text/x-perl	root:root	0o755	2.2 KB
/usr/share/doc/bioperl/examples/root/		root:root	0o755
/usr/share/doc/bioperl/examples/root/exceptions1.pl.gz	application/gzip	root:root	0o644	1.6 KB
/usr/share/doc/bioperl/examples/root/exceptions2.pl.gz	application/gzip	root:root	0o644	1.5 KB
/usr/share/doc/bioperl/examples/root/exceptions3.pl	text/x-perl	root:root	0o755	1.3 KB
/usr/share/doc/bioperl/examples/root/exceptions4.pl	text/x-perl	root:root	0o755	3.3 KB
/usr/share/doc/bioperl/examples/root/README.gz	application/gzip	root:root	0o644	2.9 KB
/usr/share/doc/bioperl/examples/searchio/		root:root	0o755
/usr/share/doc/bioperl/examples/searchio/blast_example.pl.gz	application/gzip	root:root	0o644	1.5 KB
/usr/share/doc/bioperl/examples/searchio/custom_writer.pl	text/x-perl	root:root	0o755	3.1 KB
/usr/share/doc/bioperl/examples/searchio/hitwriter.pl	text/x-perl	root:root	0o755	4.0 KB
/usr/share/doc/bioperl/examples/searchio/hspwriter.pl	text/x-perl	root:root	0o755	3.1 KB
/usr/share/doc/bioperl/examples/searchio/htmlwriter.pl	text/x-perl	root:root	0o755	1.9 KB
/usr/share/doc/bioperl/examples/searchio/psiblast_features.pl	text/x-perl	root:root	0o755	1.6 KB
/usr/share/doc/bioperl/examples/searchio/psiblast_iterations.pl	text/x-perl	root:root	0o755	2.2 KB
/usr/share/doc/bioperl/examples/searchio/rawwriter.pl	text/x-perl	root:root	0o755	1.9 KB
/usr/share/doc/bioperl/examples/searchio/resultwriter.pl	text/x-perl	root:root	0o755	3.7 KB
/usr/share/doc/bioperl/examples/searchio/waba2gff3.pl.gz	application/gzip	root:root	0o644	1.9 KB
/usr/share/doc/bioperl/examples/searchio/waba2gff.pl	text/x-perl	root:root	0o755	779 bytes
/usr/share/doc/bioperl/examples/sirna/		root:root	0o755
/usr/share/doc/bioperl/examples/sirna/rnai_finder.cgi.gz	application/gzip	root:root	0o644	5.3 KB
/usr/share/doc/bioperl/examples/sirna/TAG	text/plain	root:root	0o644	73 bytes
/usr/share/doc/bioperl/examples/structure/		root:root	0o755
/usr/share/doc/bioperl/examples/structure/structure-io.pl	text/x-perl	root:root	0o755	695 bytes
/usr/share/doc/bioperl/examples/subsequence.cgi.gz	application/gzip	root:root	0o644	1.8 KB
/usr/share/doc/bioperl/examples/tk/		root:root	0o755
/usr/share/doc/bioperl/examples/tk/gsequence.pl.gz	application/gzip	root:root	0o644	8.9 KB
/usr/share/doc/bioperl/examples/tk/hitdisplay.pl	text/x-perl	root:root	0o755	3.3 KB
/usr/share/doc/bioperl/examples/tools/		root:root	0o755
/usr/share/doc/bioperl/examples/tools/extract_genes.pl	text/x-perl	root:root	0o755	3.4 KB
/usr/share/doc/bioperl/examples/tools/gb_to_gff.pl	text/x-perl	root:root	0o755	608 bytes
/usr/share/doc/bioperl/examples/tools/gff2ps.pl.gz	application/gzip	root:root	0o644	2.3 KB
/usr/share/doc/bioperl/examples/tools/parse_codeml.pl	text/x-perl	root:root	0o755	1.2 KB
/usr/share/doc/bioperl/examples/tools/psw.pl	text/x-perl	root:root	0o755	3.2 KB
/usr/share/doc/bioperl/examples/tools/reverse-translate.pl	text/x-perl	root:root	0o755	1.3 KB
/usr/share/doc/bioperl/examples/tools/run_genscan.pl	text/x-perl	root:root	0o755	2.3 KB
/usr/share/doc/bioperl/examples/tools/run_primer3.pl	text/x-perl	root:root	0o755	2.3 KB
/usr/share/doc/bioperl/examples/tools/seq_pattern.pl	text/x-perl	root:root	0o755	3.9 KB
/usr/share/doc/bioperl/examples/tools/standaloneblast.pl.gz	application/gzip	root:root	0o644	5.0 KB
/usr/share/doc/bioperl/examples/tree/		root:root	0o755
/usr/share/doc/bioperl/examples/tree/paup2phylip.pl	text/x-perl	root:root	0o755	526 bytes
/usr/share/doc/bioperl/README.md.gz	application/gzip	root:root	0o644	4.8 KB
/usr/share/man/		root:root	0o755
/usr/share/man/man1/		root:root	0o755
/usr/share/man/man1/bp_aacomp.1p.gz	application/gzip	root:root	0o644	2.4 KB
/usr/share/man/man1/bp_biofetch_genbank_proxy.1p.gz	application/gzip	root:root	0o644	3.1 KB
/usr/share/man/man1/bp_bioflat_index.1p.gz	application/gzip	root:root	0o644	2.3 KB
/usr/share/man/man1/bp_biogetseq.1p.gz	application/gzip	root:root	0o644	2.0 KB
/usr/share/man/man1/bp_blast2tree.1p.gz	application/gzip	root:root	0o644	1.8 KB
/usr/share/man/man1/bp_bulk_load_gff.1p.gz	application/gzip	root:root	0o644	3.6 KB
/usr/share/man/man1/bp_chaos_plot.1p.gz	application/gzip	root:root	0o644	2.7 KB
/usr/share/man/man1/bp_classify_hits_kingdom.1p.gz	application/gzip	root:root	0o644	2.7 KB
/usr/share/man/man1/bp_composite_LD.1p.gz	application/gzip	root:root	0o644	2.2 KB
/usr/share/man/man1/bp_dbsplit.1p.gz	application/gzip	root:root	0o644	2.5 KB
/usr/share/man/man1/bp_download_query_genbank.1p.gz	application/gzip	root:root	0o644	2.2 KB
/usr/share/man/man1/bp_extract_feature_seq.1p.gz	application/gzip	root:root	0o644	2.5 KB
/usr/share/man/man1/bp_fastam9_to_table.1p.gz	application/gzip	root:root	0o644	2.3 KB
/usr/share/man/man1/bp_fast_load_gff.1p.gz	application/gzip	root:root	0o644	3.5 KB
/usr/share/man/man1/bp_fetch.1p.gz	application/gzip	root:root	0o644	3.3 KB
/usr/share/man/man1/bp_filter_search.1p.gz	application/gzip	root:root	0o644	2.3 KB
/usr/share/man/man1/bp_find-blast-matches.1p.gz	application/gzip	root:root	0o644	3.0 KB
/usr/share/man/man1/bp_flanks.1p.gz	application/gzip	root:root	0o644	3.4 KB
/usr/share/man/man1/bp_gccalc.1p.gz	application/gzip	root:root	0o644	2.4 KB
/usr/share/man/man1/bp_genbank2gff.1p.gz	application/gzip	root:root	0o644	2.8 KB
/usr/share/man/man1/bp_genbank2gff3.1p.gz	application/gzip	root:root	0o644	5.1 KB
/usr/share/man/man1/bp_generate_histogram.1p.gz	application/gzip	root:root	0o644	2.3 KB
/usr/share/man/man1/bp_heterogeneity_test.1p.gz	application/gzip	root:root	0o644	2.3 KB
/usr/share/man/man1/bp_hivq.1p.gz	application/gzip	root:root	0o644	3.7 KB
/usr/share/man/man1/bp_hmmer_to_table.1p.gz	application/gzip	root:root	0o644	2.2 KB
/usr/share/man/man1/bp_index.1p.gz	application/gzip	root:root	0o644	3.1 KB
/usr/share/man/man1/bp_load_gff.1p.gz	application/gzip	root:root	0o644	3.3 KB
/usr/share/man/man1/bp_local_taxonomydb_query.1p.gz	application/gzip	root:root	0o644	2.1 KB
/usr/share/man/man1/bp_make_mrna_protein.1p.gz	application/gzip	root:root	0o644	2.2 KB
/usr/share/man/man1/bp_mask_by_search.1p.gz	application/gzip	root:root	0o644	2.7 KB
/usr/share/man/man1/bp_meta_gff.1p.gz	application/gzip	root:root	0o644	2.4 KB
/usr/share/man/man1/bp_mrtrans.1p.gz	application/gzip	root:root	0o644	2.1 KB
/usr/share/man/man1/bp_mutate.1p.gz	application/gzip	root:root	0o644	2.4 KB
/usr/share/man/man1/bp_netinstall.1p.gz	application/gzip	root:root	0o644	2.3 KB
/usr/share/man/man1/bp_nexus2nh.1p.gz	application/gzip	root:root	0o644	1.9 KB
/usr/share/man/man1/bp_nrdb.1p.gz	application/gzip	root:root	0o644	2.2 KB
/usr/share/man/man1/bp_oligo_count.1p.gz	application/gzip	root:root	0o644	2.6 KB
/usr/share/man/man1/bp_pairwise_kaks.1p.gz	application/gzip	root:root	0o644	2.6 KB
/usr/share/man/man1/bp_parse_hmmsearch.1p.gz	application/gzip	root:root	0o644	2.3 KB
/usr/share/man/man1/bp_process_gadfly.1p.gz	application/gzip	root:root	0o644	2.9 KB
/usr/share/man/man1/bp_process_sgd.1p.gz	application/gzip	root:root	0o644	2.3 KB
/usr/share/man/man1/bp_process_wormbase.1p.gz	application/gzip	root:root	0o644	2.6 KB
/usr/share/man/man1/bp_query_entrez_taxa.1p.gz	application/gzip	root:root	0o644	2.1 KB
/usr/share/man/man1/bp_remote_blast.1p.gz	application/gzip	root:root	0o644	2.3 KB
/usr/share/man/man1/bp_revtrans-motif.1p.gz	application/gzip	root:root	0o644	2.7 KB
/usr/share/man/man1/bp_search2alnblocks.1p.gz	application/gzip	root:root	0o644	2.5 KB
/usr/share/man/man1/bp_search2gff.1p.gz	application/gzip	root:root	0o644	3.1 KB
/usr/share/man/man1/bp_search2table.1p.gz	application/gzip	root:root	0o644	2.2 KB
/usr/share/man/man1/bp_search2tribe.1p.gz	application/gzip	root:root	0o644	2.4 KB
/usr/share/man/man1/bp_seqconvert.1p.gz	application/gzip	root:root	0o644	2.3 KB
/usr/share/man/man1/bp_seqcut.1p.gz	application/gzip	root:root	0o644	2.6 KB
/usr/share/man/man1/bp_seqfeature_load.1p.gz	application/gzip	root:root	0o644	3.3 KB
/usr/share/man/man1/bp_seq_length.1p.gz	application/gzip	root:root	0o644	2.3 KB
/usr/share/man/man1/bp_seqpart.1p.gz	application/gzip	root:root	0o644	2.7 KB
/usr/share/man/man1/bp_seqret.1p.gz	application/gzip	root:root	0o644	2.1 KB
/usr/share/man/man1/bp_seqretsplit.1p.gz	application/gzip	root:root	0o644	2.4 KB
/usr/share/man/man1/bp_split_seq.1p.gz	application/gzip	root:root	0o644	2.4 KB
/usr/share/man/man1/bp_sreformat.1p.gz	application/gzip	root:root	0o644	2.3 KB
/usr/share/man/man1/bp_taxid4species.1p.gz	application/gzip	root:root	0o644	2.3 KB
/usr/share/man/man1/bp_taxonomy2tree.1p.gz	application/gzip	root:root	0o644	2.3 KB
/usr/share/man/man1/bp_translate_seq.1p.gz	application/gzip	root:root	0o644	2.2 KB
/usr/share/man/man1/bp_tree2pag.1p.gz	application/gzip	root:root	0o644	2.0 KB
/usr/share/man/man1/bp_unflatten_seq.1p.gz	application/gzip	root:root	0o644	3.7 KB