/usr/share/biomaj/global.properties.tpl is in biomaj 1.2.3-11.
This file is owned by root:root, with mode 0o600.
The actual contents of the file can be viewed below.
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# Global properties file
#To override these settings for a specific database go to its
#properties file and uncomment or add the specific line you want
#to override.
#----------------
# Mail Configuration
#---------------
#Uncomment thes lines if you want receive mail when the workflow is finished
#mail.smtp.host=
#mail.admin=
#mail.from=
#---------------------
#Proxy authentification
#---------------------
#proxyHost=
#proxyPort=
#proxyUser=
#proxyPassword=
#---------------------
# PROTOCOL
#-------------------
#possible values : ftp, http, rsync, local
port=21
username=anonymous
password=anonymous@nowhere.com
#The root directory where all databases are stored.
#If your data is not stored under one directory hirearchy
#you can override this value in the database properties file.
data.dir=/var/lib/biomaj/
#access user for production directories
production.directory.chmod=775
#Number of thread during the download
bank.num.threads=4
#Number of threads to use for downloading and processing
files.num.threads=4
#to keep more than one release increase this value
keep.old.version=0
#Link copy property
do.link.copy=false
#look here to specified a new format : http://java.sun.com/j2se/1.4.2/docs/api/java/text/SimpleDateFormat.html
release.dateformat=yyyy-MM-dd
#The historic log file is generated in log/
#define level information for output : DEBUG, VERBOSE,INFO,WARN,ERR
#to have info about target and task ant use VERBOSE
historic.logfile.level=VERBOSE
historic.logfile.properties=false
historic.logfile.task=true
historic.logfile.target=true
http.parse.dir.line=<a[\\s]+href=\"([\\S]+)/\".*alt=\"\\[DIR\\]\">.*([\\d]{2}-[\\w\\d]{2,5}-[\\d]{4}\\s[\\d]{2}:[\\d]{2})
http.parse.file.line=<a[\\s]+href=\"([\\S]+)\".*([\\d]{2}-[\\w\\d]{2,5}-[\\d]{4}\\s[\\d]{2}:[\\d]{2})[\\s]+([\\d\\.]+[MKG]{0,1})
http.group.dir.name=1
http.group.dir.date=2
http.group.file.name=1
http.group.file.date=2
http.group.file.size=3
#Needed if data sources are contains in an archive
log.files=true
local.files.excluded=\\.panfs.*
#~40mn
ftp.timeout=2000000
ftp.automatic.reconnect=5
ftp.active.mode=false
# Skip local files check?
skipFileCheck=false
# Bank default access
visibility.default=public
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