This file is indexed.

/usr/sbin/bdii-update is in bdii 5.2.23-1.

This file is owned by root:root, with mode 0o755.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
#! /usr/bin/python
##############################################################################
# Copyright (c) Members of the EGEE Collaboration. 2004.
# See http://www.eu-egee.org/partners/ for details on the copyright
# holders.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at #
#    http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS
# OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
##############################################################################

import os
import re
import sys
import time
import getopt
import socket
import signal
import string
import pickle
import logging
import tempfile

def parse_options():

    config = {}

    try:
        opts, args = getopt.getopt(sys.argv[1:], "dc:", ["config"])
    except getopt.GetoptError:
        sys.stderr.write("Error: Invalid option specified.\n")
        print_usage()
        sys.exit(2)
    for o, a in opts:
        if o in ("-c", "--config"):
            config['BDII_CONFIG_FILE'] = a
        if o in ("-d", "--daemon"):
            config['BDII_DAEMON'] = True

    if ( not config.has_key('BDII_CONFIG_FILE')):
        sys.stderr.write("Error: Configuration file not specified.\n")
        print_usage()
        sys.exit(1)         

    if ( not os.path.exists(config['BDII_CONFIG_FILE']) ):
        sys.stderr.write("Error: Configuration file %s does not exist.\n" %  config['BDII_CONFIG_FILE'])
        sys.exit(1)         

    return config

def get_config(config):
    
    for line in open(config['BDII_CONFIG_FILE']).readlines():
        index=line.find("#")
        if (index > -1):
            line=line[:index]
        index=line.find("=")
        if (index > -1):
            key=line[:index].strip()
            value=line[index+1:].strip()
            config[key] = value

    if 'SLAPD_CONF' in os.environ:
        config['SLAPD_CONF'] = os.environ['SLAPD_CONF']

    if ( not config.has_key('BDII_DAEMON') ):
        config['BDII_DAEMON'] = False

    if ( not config.has_key('BDII_RUN_DIR') ):
        config['BDII_RUN_DIR'] = '/var/run/bdii'

    if ( not config.has_key('BDII_PID_FILE') ):
        config['BDII_PID_FILE'] = "%s/bdii-update.pid" % config['BDII_RUN_DIR']

    for parameter in ['BDII_LOG_FILE', 'BDII_LOG_LEVEL', 'BDII_LDIF_DIR',
                      'BDII_PROVIDER_DIR', 'BDII_PLUGIN_DIR',
                      'BDII_READ_TIMEOUT']:
        if ( not config.has_key(parameter) ):
            sys.stderr.write("Error: Configuration parameter %s is not specified in the configuration file %s.\n" % (parameter, config['BDII_CONFIG_FILE']))
            sys.exit(1)

    for parameter in ['BDII_LDIF_DIR','BDII_PROVIDER_DIR','BDII_PLUGIN_DIR']:
        if ( not os.path.exists(config[parameter])):
            sys.stderr.write("Error: %s %s does not exist.\n" %  (parameter, config[parameter]))
            sys.exit(1)
    if not config.has_key('BDII_LOG_LEVEL'):
        config['BDII_LOG_LEVEL']='ERROR'
    else:
        log_levels=['CRITICAL','ERROR','WARNING','INFO','DEBUG']
        try:
            log_levels.index(config['BDII_LOG_LEVEL'])
        except ValueError, e:
            sys.stderr.write("Error: Log level %s is not an allowed level. %s\n" % (config['BDII_LOG_LEVEL'], log_levels))
            sys.exit(1)

    config['BDII_READ_TIMEOUT'] = int(config['BDII_READ_TIMEOUT'])

    if ( config['BDII_DAEMON'] == True ):
        for parameter in ['BDII_PORT', 'BDII_BREATHE_TIME', 'BDII_VAR_DIR',
                          'BDII_ARCHIVE_SIZE', 'BDII_DELETE_DELAY',
                          'SLAPD_CONF']:
            if ( not config.has_key(parameter) ):
                sys.stderr.write("Error: Configuration parameter %s is not specified in the configuration file %s.\n" % (parameter, config['BDII_CONFIG_FILE']))
                sys.exit(1)
        if ( os.path.exists(config['SLAPD_CONF']) ):
            config['BDII_PASSWD'] = {}
            config['BDII_PASSWD_FILE'] = {}
            if not os.path.exists(config['BDII_RUN_DIR']):
                os.makedirs(config['BDII_RUN_DIR'])
            rootdn = False
            rootpw = False
            filename = ""
            for line in open(config['SLAPD_CONF']):
                if ( line.find("rootdn") > -1 ):
                    rootdn = line.replace("rootdn","").strip()
                    rootdn = rootdn.replace('"','').replace(" ","")
                    filename = rootdn.replace('o=','')
                    if ( rootpw ):
                        config['BDII_PASSWD'][rootdn] = rootpw
                        config['BDII_PASSWD_FILE'][rootdn] = "%s/%s" % (config['BDII_RUN_DIR'], filename) 
                        pf = os.open(config['BDII_PASSWD_FILE'][rootdn], os.O_WRONLY | os.O_CREAT, 0600)
                        os.write(pf,rootpw) 
                        os.close(pf) 
                        rootdn = False
                        rootpw = False
                if ( line.find("rootpw") > -1 ):
                    rootpw = line.replace("rootpw","").strip()
                    if ( rootdn ):
                        config['BDII_PASSWD'][rootdn] = rootpw
                        config['BDII_PASSWD_FILE'][rootdn] = "%s/%s" % (config['BDII_RUN_DIR'], filename)
                        pf = os.open(config['BDII_PASSWD_FILE'][rootdn], os.O_WRONLY | os.O_CREAT, 0600)
                        os.write(pf,rootpw)
                        os.close(pf)
                        rootdn = False
                        rootpw = False
        config['BDII_BREATHE_TIME'] = float(config['BDII_BREATHE_TIME'])
        config['BDII_ARCHIVE_SIZE'] = int(config['BDII_ARCHIVE_SIZE'])
        config['BDII_DELETE_DELAY'] = int(config['BDII_DELETE_DELAY'])
        config['BDII_HOSTNAME'] = 'localhost'

    return config

def print_usage():
    sys.stderr.write('''Usage: %s [ OPTIONS ] 
 
     -c --config      BDII configuration file
     -d --daemon      Run BDII in daemon mode
''' % (str(sys.argv[0])))

def create_daemon(log_file):
    try:
        pid = os.fork()
    except OSError, e:
        return((e.errno, e.strerror))

    if (pid == 0):
        os.setsid()
        signal.signal(signal.SIGHUP, signal.SIG_IGN)
        try:
            pid = os.fork()
        except OSError, e:
            return((e.errno, e.strerror))
        if (pid == 0):
            os.umask(022)
        else:
            os._exit(0)
    else:
        os._exit(0)
    try:
        maxfd=os.sysconf("SC_OPEN_MAX")
    except (AttributeError, ValueError):
        maxfd=256
    for fd in range(3, maxfd):
        try:
            os.close(fd)
        except OSError:
            pass
    os.close(0)
    os.open("/dev/null", os.O_RDONLY)
    os.close(1)
    os.open("/dev/null", os.O_WRONLY)

    # connect stderr to log file
    e = os.open(log_file, os.O_WRONLY | os.O_APPEND | os.O_CREAT, 0644)
    os.dup2(e, 2)
    os.close(e)
    sys.stderr = os.fdopen(2, 'a', 0)

    # Write PID
    pid_file = open(config['BDII_PID_FILE'],'w')
    pid_file.write("%s\n" % (str(os.getpid())))
    pid_file.close()

def get_logger(log_file,log_level):

    log = logging.getLogger('bdii-update')
    hdlr = logging.StreamHandler(sys.stderr)
    formatter = logging.Formatter('%(asctime)s: [%(levelname)s] %(message)s')
    hdlr.setFormatter(formatter)
    log.addHandler(hdlr)
    log.setLevel(logging.__dict__.get(log_level))

    return log

def handler(signum, frame):
    if ( signum ==14 ):
        # Commit suicide
        process_group=os.getpgrp()
        os.killpg(process_group, signal.SIGTERM)
        sys.exit(1)

def read_ldif(source):

    # Get pipe file descriptors
    read_fd, write_fd = os.pipe()

    # Fork
    pid = os.fork()

    if pid:
        
        # Close write file descriptor as we don't need it.
        os.close(write_fd)
     
        read_fh = os.fdopen(read_fd)
        raw_ldif = read_fh.read()
        result = os.waitpid(pid, 0)
        if (result[1] > 0):
            log.error("Timed out while reading %s", (source))
            return ""
        raw_ldif = raw_ldif.replace("\n ", "")
        
        return raw_ldif

    else:
        
        # Close read file d
        os.close(read_fd)
        
        # Set process group
        os.setpgrp()
                
        # Setup signal handler
        signal.signal(signal.SIGALRM, handler)
        signal.alarm(config['BDII_READ_TIMEOUT'])

        # Open pipe to LDIF
        if ( source[:7] == 'ldap://'):
            url=source.split('/')
            command = "ldapsearch -LLL -x -h %s -b %s 2>/dev/null" % ( url[2], url[3])
            pipe = os.popen(command)
        elif( source[:7] == 'file://' ):
            pipe=open(source[7:])
        else:
            pipe=os.popen(source)    

        raw_ldif=pipe.read()

        # Close LDIF pipe
        pipe.close()
        try:
            write_fh = os.fdopen(write_fd, 'w')
            write_fh.write(raw_ldif)
            write_fh.close()
        except IOError:
            log.error("Information provider %s terminated unexpectedly." % source)
        signal.alarm(0) # Disable the alarm
        sys.exit(0)

def get_dns(ldif):
    dns = {}
    last_dn_index = len(ldif)
    while ( 1 ):
        dn_index = ldif.rfind("dn:",0,last_dn_index)
        if ( dn_index == -1):
            break
        end_dn_index = ldif.find("\n",dn_index, last_dn_index) 
        dn = ldif[dn_index + 4 :end_dn_index].lower()
        dn = re.sub("\s*,\s*",",",dn)
        dn = re.sub("\s*=\s*","=",dn)
        dn = dn.replace("\\5c","\\\\") # Replace encoded slash
        dn = dn.replace("\\2c","\\,") # Replace encoded comma
        dn = dn.replace("\\3d","\\=") # Replace encoded equals
        dn = dn.replace("\\2b","\\+") # Replace encoded plus
        dn = dn.replace("\\3b","\\;") # Replace encoded semi colon
        dn = dn.replace("\\22","\\\"") # Replace encoded quote
        dn = dn.replace("\\3e","\\>") # Replace encoded greater than
        dn = dn.replace("\\3c","\\<") # Replace encoded less than
        end_entry_index = ldif.find("\n\n",dn_index, last_dn_index) 
        dns[dn] = (dn_index, last_dn_index, end_dn_index)
        last_dn_index = dn_index
    return dns

def group_dns(dns):
    grouped = {}
    for dn in dns:
        index = dn.rfind(",")
        root = dn[index +1 :].strip()
        if grouped.has_key(root):
            grouped[root].append(dn)
        else:
            if root in config['BDII_PASSWD']:
                grouped[root] = [ dn ]
            else:
                if "o=shadow" in config['BDII_PASSWD'] and root == "o=grid":
                    grouped[root] = [ dn ]
                elif root != "o=shadow":
                    log.error("dn suffix %s in not specified in the slapd configuration file." % (root))


    return grouped

def convert_entry(entry_string):

    multivalued = [ 'objectclass',
                    'gluehostapplicationsoftwareruntimeenvironment',
                    'glueserviceaccesscontrolrule',
                    'glueserviceaccesscontrolbaserule',
                    'glueceaccesscontrolbaserule',
                    'gluesaaccesscontrolbaserule',
                    'gluesecontrolprotocolcapability',
                    'glueseaccessprotocolsupportedsecurity',
                    'gluesacapability',
                    'gluevoinfoaccesscontrolbaserule',
                    'gluesecontrolprotocolcapability',
                    'gluecesebindgroupseuniqueid',
                    'gluecesebindseuniqueid',
                    'gluecesebindmountinfo',
                    'gluecesebindweight',
                    'glueserviceowner',
                    'gluechunkkey',
                    'glueforeignkey',
                    'gluecesebindmountinfo',
                    'glueseaccessprotocolcapability',
                    'gluesiteotherinfo',
                    'gluesitesponsor',
                    'gluececapability', 
                    'glueclusterservice',
                    'glue2entityotherinfo',
                    'glue2extensionentityforeignkey',
                    'glue2locationserviceforeignkey',
                    'glue2locationdomainforeignkey',
                    'glue2contactserviceforeignkey',
                    'glue2contactdomainforeignkey',
                    'glue2domainwww',
                    'glue2admindomainowner',
                    'glue2admindomainadmindomainforeignkey',
                    'glue2userdomainusermanager',
                    'glue2userdomainmember',
                    'glue2userdomainuserdomainforeignkey',
                    'glue2servicecapability',
                    'glue2servicestatusinfo',
                    'glue2serviceadmindomainforeignkey',
                    'glue2serviceserviceforeignkey',
                    'glue2endpointcapability',
                    'glue2endpointinterfaceextension',
                    'glue2endpointwsdl',
                    'glue2endpointsupportedprofile',
                    'glue2endpointsemantics',
                    'glue2endpointtrustedca',
                    'glue2shareendpointforeignkey',
                    'glue2shareresourceforeignkey',
                    'glue2activityactivityforeignkey',
                    'glue2policyrule',
                    'glue2policyuserdomainforeignkey',
                    'glue2accesspolicyendpointforeignkey',
                    'glue2mappingpolicyshareforeignkey',
                    'glue2computingendpointjobdescription',
                    'glue2computingsharetag',
                    'glue2computingsharecomputingendpointforeignkey',
                    'glue2computingshareexecutionenvironmentforeignkey',
                    'glue2computingmanagernetworkinfo',
                    'glue2executionenvironmentnetworkinfo',
                    'glue2applicationenvironmentbestbenchmark',
                    'glue2applicationenvironmentexecutionenvironmentforeignkey',
                    'glue2computingactivitystate',
                    'glue2computingactivityrestartstate',
                    'glue2computingactivityrequestedapplicationenvironment',
                    'glue2computingactivityexecutionnode',
                    'glue2storageshareaccessmode',
                    'glue2storageshareretentionpolicy',
                    'glue2storagesharestorageendpointforeignkey',
                    'glue2storagesharedatastoreforeignkey',
                    'glue2storagesharecapacitystorageshareforeignkey',
                    'glue2tocomputingservicestorageaccessprotocolforeignkey']
                    
    entry = {}
    for line in entry_string.split("\n"):
        index = line.find(":")
        if (index > -1):
            attribute = line[:index].lower()
            value = line[index + 1:].strip()
            
            if entry.has_key(attribute):
                if not value in entry[attribute]:
                    entry[attribute].append(value)
            else:
                entry[attribute] = [value]
    return entry

def convert_back(entry):
    entry_string =  "dn: %s\n" %(entry["dn"][0])
    entry.pop("dn")
    for attribute in entry.keys():
        attribute=attribute.lower()
        for value in entry[attribute]:
            entry_string += "%s: %s\n" %(attribute, value)

    return entry_string

def ldif_diff(dn, old_entry, new_entry):

    add_attribute={}
    delete_attribute={}
    replace_attribute={}
    
    old_entry = convert_entry(old_entry)
    new_entry = convert_entry(new_entry)
    dn_perserved_case = None
    for attribute in new_entry.keys():
        attribute=attribute.lower()
        if (attribute == "dn"):
            dn_perserved_case = new_entry['dn'][0]
            continue

        # If the old entry has the attribue we need to compare values 
        if ( old_entry.has_key(attribute) ):

            # If the old entries are different find the modify. 
            if ( not new_entry[attribute] == old_entry[attribute]):
                    replace_attribute[attribute] = new_entry[attribute]

        # The old entry does not have the attribute so add it. 
        else:
            add_attribute[attribute] =  new_entry[attribute]

    # Checking for removed attributes
    for attribute in old_entry.keys():
        if (attribute.lower() == "dn"):
            continue
        if not new_entry.has_key(attribute):
            delete_attribute[attribute]=old_entry[attribute]


    # Create LDIF modify statement
    ldif=['dn: %s' % dn_perserved_case ]
    ldif.append('changetype: modify')
    for attribute in add_attribute.keys():
        attribute=attribute.lower()
        ldif.append('add: %s' % (attribute) )
        for value in add_attribute[attribute]:
            ldif.append('%s: %s' % (attribute, value))
        ldif.append('-')
    for attribute in replace_attribute.keys():
        attribute=attribute.lower()
        ldif.append('replace: %s' % (attribute) )
        for value in replace_attribute[attribute]:
            ldif.append('%s: %s' % (attribute, value))
        ldif.append('-')
    for attribute in delete_attribute.keys():
        attribute=attribute.lower()
        ldif.append('delete: %s' % (attribute) )
        ldif.append('-')

    if (len(ldif) > 3):
        ldif = "\n".join(ldif) + "\n\n"
    else:
        ldif = ""
        
    return ldif

def modify_entry(entry, mods):
    mods = convert_entry(mods)
    entry = convert_entry(entry)
    if ( mods.has_key('changetype')):
        # Handle LDIF delete attribute
        if ( mods.has_key('delete')):
            for attribute in mods['delete']:
                attribute=attribute.lower()
                if (entry.has_key(attribute)):
                    if (mods.has_key(attribute)):
                        for value in mods[attribute]:
                            try:
                                entry[attribute].remove(value)
                                if (len(entry[attribute]) == 0):
                                    entry.pop(attribute)
                            except ValueError, e:
                                pass
                            except KeyError, e:
                                pass
                    else:
                        entry.pop(attribute)

        # Handle LDIF replace attribute
        if ( mods.has_key('replace')):
            for attribute in mods['replace']:
                attribute=attribute.lower()
                if (entry.has_key(attribute)):
                    if (mods.has_key(attribute)):
                        entry[attribute] = mods[attribute]

        # Handle LDIF add attribute
        if ( mods.has_key('add')):
            for attribute in mods['add']:
                attribute=attribute.lower()
                if ( not entry.has_key(attribute)):
                    log.debug("attribute: %s" %(attribute))
                    entry[attribute] = mods[attribute]
                else:
                    entry[attribute].extend(mods[attribute])
                    
    # Just old style just change
    else:
        for attribute in mods.keys():
            if (entry.has_key(attribute)):
                entry[attribute]=mods[attribute]

    entry_string = convert_back(entry)
    return entry_string
    
def fix(dns,ldif):
    response = []
    append = response.append
    
    for dn in dns.keys():
        entry = convert_entry(ldif[dns[dn][0]:dns[dn][1]])
        if  ( dn[:11].lower() == "mds-vo-name" ):
            if 'objectclass' in entry:
                if 'mds' in map( lambda x : x.lower(), entry['objectclass']):
                    if 'gluetop' in map( lambda x : x.lower(), entry['objectclass']):
                        value=dn[12:dn.index(",")]
                        entry = { 'dn': [dn], 'objectclass': ['MDS'], 'mds-vo-name': [value] }
        entry = convert_back(entry)         
        append(entry)
    response = "".join(response)
    return response

def log_errors(error_file, dns):    
    log.debug("Logging Errors")
    request=0
    dn = None
    error_counter=0
    for line in open(error_file).readlines():
        if ( line[:7] == 'request' ):
            request += 1
        else:
            if ( request > 1 ):
                try:
                    if ( not dn == dns[request - 2] ):
                        error_counter += 1
                        dn = dns[request - 2]
                        log.warn( "dn: %s" %(dn) )
                except IndexError, e:
                    log.error("Problem with error reporting ...")
                    log.error("Request Num: %i, Line: %s, dns: %i" %(request,line,len(dns) ))
            if ( len(line) > 5 ):
                log.warn(line.strip())
    return error_counter

def main(config, log):

    log.info("Starting Update Process")
    while 1:
        log.info("Starting Update")
        stats={}
        stats['update_start'] = time.time()

        new_ldif=""

        log.info("Reading static LDIF files ...")
        stats['read_start'] = time.time()
        ldif_files=os.listdir(config['BDII_LDIF_DIR'])
        for file_name in ldif_files:
            if ( file_name[-5:] == '.ldif' ):
                if ( not ((file_name[0] == '#') or (file_name[0] == '.'))):
                    file_url="file://%s/%s" %(config['BDII_LDIF_DIR'],file_name)
                    log.debug("Reading %s" % (file_url[7:]) )  
                    response = read_ldif(file_url)
                    new_ldif = new_ldif + response
                    
        stats['read_stop'] = time.time()

        log.info("Running Providers")
        stats['providers_start'] = time.time()
        providers=os.listdir(config['BDII_PROVIDER_DIR'])
        for provider in providers:
            if ( not ( provider[-1:] == '~' ) or (provider[0] == '#') or (provider[0] == '.')):
                log.debug("Running %s/%s" % (config['BDII_PROVIDER_DIR'],provider) )  
                response=read_ldif("%s/%s" % (config['BDII_PROVIDER_DIR'],provider))
                new_ldif = new_ldif + response                
                
        stats['providers_stop'] = time.time()

        new_dns = get_dns(new_ldif)
        ldif_modify=""

        log.info("Running Plugins")
        stats['plugins_start'] = time.time()
        plugins=os.listdir(config['BDII_PLUGIN_DIR'])
        for plugin in plugins:
            if ( not ( plugin[-1:] == '~' ) or (plugin[0] == '#') or (plugin[0] == '.')):
                log.debug("Running %s/%s" % (config['BDII_PLUGIN_DIR'],plugin) )  
                response = read_ldif("%s/%s" % (config['BDII_PLUGIN_DIR'],plugin))
                modify_dns = get_dns(response)
                for dn in modify_dns.keys():
                    if ( new_dns.has_key(dn)):
                        mod_entry = modify_entry( new_ldif[new_dns[dn][0]:new_dns[dn][1]],\
                                                  response[modify_dns[dn][0]:modify_dns[dn][1]])
                        start = len(new_ldif)
                        end = start + len(mod_entry)
                        new_dns[dn]=(start, end)
                        new_ldif = new_ldif + mod_entry
                    else:
                        ldif_modify += response[modify_dns[dn][0]:modify_dns[dn][1]]
        stats['plugins_stop'] = time.time()

        log.debug("Doing Fix")
        new_ldif = fix(new_dns, new_ldif)

        log.debug("Writing new_ldif to disk")
        if ( config['BDII_LOG_LEVEL'] == 'DEBUG' ):
            dump_fh=open("%s/new.ldif" % (config['BDII_VAR_DIR']),'w')
            dump_fh.write(new_ldif)
            dump_fh.close()

        if ( not config['BDII_DAEMON'] ):
            print new_ldif
            sys.exit(0)
            
        log.info("Reading old LDIF file ...")
        stats['read_old_start'] = time.time()
        old_ldif_file = "%s/old.ldif" % (config['BDII_VAR_DIR'])
        if ( os.path.exists(old_ldif_file) ):
            old_ldif = read_ldif("file://%s" % (old_ldif_file))
        else:
            old_ldif = ""
        stats['read_old_stop'] = time.time()
        
        log.debug("Starting Diff")
        ldif_add=[]
        ldif_delete=[]

        new_dns = get_dns(new_ldif)
        old_dns = get_dns(old_ldif)

        for dn in new_dns.keys():
            if old_dns.has_key(dn):
                old = old_ldif[old_dns[dn][0]:old_dns[dn][1]].strip()
                new = new_ldif[new_dns[dn][0]:new_dns[dn][1]].strip()

                # If the entries are different we need to compare them
                if ( not new == old):
                    entry = ldif_diff(dn,old,new)
                    ldif_modify += entry
            else:
                ldif_add.append(dn)

        # Checking for removed entries
        for dn in old_dns.keys():
            if not new_dns.has_key(dn):
                ldif_delete.append(old_ldif[old_dns[dn][0] + 4:old_dns[dn][2]].strip())
        
        log.debug("Finished Diff")
        
        log.debug("Sorting Add Keys")
        ldif_add.sort(lambda x, y: cmp(len(x), len(y)))

        log.debug("Writing ldif_add to disk")
        if ( config['BDII_LOG_LEVEL'] == 'DEBUG' ):
            dump_fh=open("%s/add.ldif" % (config['BDII_VAR_DIR']),'w')
            for dn in ldif_add:
                dump_fh.write(new_ldif[new_dns[dn][0]:new_dns[dn][1]])
                dump_fh.write("\n")
            dump_fh.close()

        log.debug("Adding New Entries")
        stats['db_update_start'] = time.time()

        if ( config['BDII_LOG_LEVEL'] == 'DEBUG' ):
            error_file="%s/add.err" %(config['BDII_VAR_DIR'])
        else:
            error_file=tempfile.mktemp()

        roots = group_dns(ldif_add)
        suffixes = roots.keys()
        if "o=shadow" in suffixes:
            index = suffixes.index("o=shadow")
            if index > 0:
                suffixes[index] = suffixes[0]
                suffixes[0] = "o=shadow"

        add_error_counter = 0
        for root in suffixes:
            try:
                bind = root
                if "o=shadow" in config['BDII_PASSWD']:
                    if root == "o=grid":
                        bind = "o=shadow"
                input_fh=os.popen("ldapadd -d 256 -x -c -h %s -p %s -D %s -y %s >/dev/null 2>%s" %(config['BDII_HOSTNAME'], config['BDII_PORT'], bind, config['BDII_PASSWD_FILE'][bind], error_file), 'w')
                for dn in roots[root]:
                    input_fh.write(new_ldif[new_dns[dn][0]:new_dns[dn][1]])
                    input_fh.write("\n")
                input_fh.close()
            except IOError, KeyError:
                log.error("Could not add new entries to the database.")
              
            add_error_counter += log_errors(error_file,ldif_add)

            if ( not config['BDII_LOG_LEVEL'] == 'DEBUG' ):
                os.remove(error_file)
                        
        log.debug("Writing ldif_modify to disk")
        if ( config['BDII_LOG_LEVEL'] == 'DEBUG' ):
            dump_fh=open("%s/modify.ldif" % (config['BDII_VAR_DIR']),'w')
            dump_fh.write(ldif_modify)
            dump_fh.close()

        log.debug("Modify New Entries")
        if ( config['BDII_LOG_LEVEL'] == 'DEBUG' ):
            error_file="%s/modify.err" % (config['BDII_VAR_DIR'])
        else:
            error_file=tempfile.mktemp()

        ldif_modify_dns = get_dns(ldif_modify)
        roots = group_dns(ldif_modify_dns)
        modify_error_counter = 0
        for root in roots.keys():
            try:
                bind = root
                if "o=shadow" in config['BDII_PASSWD']:
                    if root == "o=grid":
                        bind = "o=shadow"
                input_fh=os.popen("ldapmodify -d 256 -x -c -h %s -p %s -D %s -y %s >/dev/null 2>%s" %(config['BDII_HOSTNAME'], config['BDII_PORT'], bind, config['BDII_PASSWD_FILE'][bind], error_file), 'w')
                for dn in roots[root]:
                    input_fh.write(ldif_modify[ldif_modify_dns[dn][0]:ldif_modify_dns[dn][1]])
                    input_fh.write("\n")
                input_fh.close()
            except IOError, KeyError:
                log.error("Could not modify entries in the database.")

            modify_error_counter += log_errors(error_file, ldif_modify_dns.keys())

            if ( not config['BDII_LOG_LEVEL'] == 'DEBUG' ):
                os.remove(error_file)

        log.debug("Sorting Delete Keys")
        ldif_delete.sort(lambda x, y: cmp(len(y), len(x)))

        log.debug("Writing ldif_delete to disk")
        if ( config['BDII_LOG_LEVEL'] == 'DEBUG' ):
            dump_fh=open("%s/delete.ldif" % (config['BDII_VAR_DIR']),'w')
            for dn in ldif_delete:
                dump_fh.write("%s\n" % (dn))
            dump_fh.close()

        # Delayed delete Function
        if config['BDII_DELETE_DELAY'] > 0:
            log.debug("Doing Delayed Delete")
            delete_timestamp = time.time()

            # Get DNs of entries to be deleted not yet in delayed delete so their status can be updated
            new_delayed_delete_file = '%s/new_delayed_delete.pkl' % (config['BDII_VAR_DIR'])
            try:
                nfh = open(new_delayed_delete_file,'w')
                nfh.write("")
            except IOError:
                log.error("Unable to open new_delayed_delete file %s" % (new_delayed_delete))

            delayed_delete_file = '%s/delayed_delete.pkl' % (config['BDII_VAR_DIR'])
            if os.path.exists(delayed_delete_file):
                file_handle = open(delayed_delete_file, 'rb')
                delay_delete = pickle.load(file_handle)
                file_handle.close()
            else:
                delay_delete = {}
                
            # Add remove cache timestamps that have been readded
            for dn in delay_delete.keys():
                if dn not in ldif_delete:
                    log.debug("Removing %s from cache (readded)" %(dn,))
                    delay_delete.pop(dn)
                
            # Add current timestamp for new deletes
            for dn in ldif_delete:
                if dn not in delay_delete:
                    delay_delete[dn] = delete_timestamp
                    nfh.write("%s\n" % (dn))
            nfh.close()

            # Remove delayed deletes from LDIF or remove from cache
            for dn in delay_delete.keys():
                if delay_delete[dn] + config['BDII_DELETE_DELAY'] >= delete_timestamp:
                    ldif_delete.remove(dn)
                else:
                    delay_delete.pop(dn)
                    
            # Store Delayed Deletes
            log.debug("Storing delayed deletes")
            file_handle = open(delayed_delete_file, 'wb')
            pickle.dump(delay_delete, file_handle)
            file_handle.close()
                             
        log.debug("Deleting Old Entries")
        if ( config['BDII_LOG_LEVEL'] == 'DEBUG' ):
            error_file="%s/delete.err" % (config['BDII_VAR_DIR'])
        else:
            error_file=tempfile.mktemp()

            
        roots = group_dns(ldif_delete)
        delete_error_counter = 0
        for root in roots.keys():
            try:
                bind = root
                if "o=shadow" in config['BDII_PASSWD']:
                    if root == "o=grid":
                        bind = "o=shadow"
                input_fh=os.popen("ldapdelete -d 256 -x -c -h %s -p %s -D %s -y %s >/dev/null 2>%s" %(config['BDII_HOSTNAME'], config['BDII_PORT'], bind, config['BDII_PASSWD_FILE'][bind], error_file), 'w')
                for dn in roots[root]:
                    input_fh.write("%s\n" % (dn))
                    log.debug("Deleting %s" %(dn))
                input_fh.close()
            except IOError, KeyError:
                log.error("Could not delete old entries in the database.")

            delete_error_counter += log_errors(error_file, ldif_delete)

            if ( not config['BDII_LOG_LEVEL'] == 'DEBUG' ):
                os.remove(error_file)

        roots = group_dns(new_dns)
        stats['query_start'] = time.time()
        if ( os.path.exists("%s/old.ldif" % config['BDII_VAR_DIR']) ):
            os.remove("%s/old.ldif" % config['BDII_VAR_DIR'])
        if ( os.path.exists("%s/old.err" % config['BDII_VAR_DIR']) ):
            os.remove("%s/old.err" % config['BDII_VAR_DIR'])
        for root in roots.keys():
            # Stop flapping due to o=shadow
            if root == "o=shadow":
                command = "ldapsearch -LLL -x -h %s -p %s -b %s -s base >> %s/old.ldif 2>> %s/old.err" % (config['BDII_HOSTNAME'], config['BDII_PORT'], root, config['BDII_VAR_DIR'], config['BDII_VAR_DIR'])
            else:
                command = "ldapsearch -LLL -x -h %s -p %s -b %s >> %s/old.ldif 2>> %s/old.err" % (config['BDII_HOSTNAME'], config['BDII_PORT'], root, config['BDII_VAR_DIR'], config['BDII_VAR_DIR'])
            result = os.system(command)
            if ( result > 0):
                log.error("Query to self failed.")
        stats['query_stop'] = time.time()
        out_file="%s/archive/%s-snapshot.gz" % (config['BDII_VAR_DIR'], time.strftime('%y-%m-%d-%H-%M-%S'))
        log.debug("Creating GZIP file")
        os.system("gzip -c %s/old.ldif > %s" %(config['BDII_VAR_DIR'], out_file) )

        infosys_output=""
        if (len(old_ldif) == 0 ):
            log.debug("ldapadd o=infosys compression")
            command="ldapadd"
            
            infosys_output+="dn: o=infosys\n"
            infosys_output+="objectClass: organization\n"
            infosys_output+="o: infosys\n\n"
            infosys_output+="dn: CompressionType=zip,o=infosys\n"
            infosys_output+="objectClass: CompressedContent\n"
            infosys_output+="Hostname: %s\n" %(config['BDII_HOSTNAME'])
            infosys_output+="CompressionType: zip\n"
            infosys_output+="Data: file://%s\n\n" %(out_file)
        else:
            log.debug("ldapmodify o=infosys compression")
            command="ldapmodify"

            infosys_output+="dn: CompressionType=zip,o=infosys\n"
            infosys_output+="changetype: Modify\n"
            infosys_output+="replace: Data\n"
            infosys_output+="Data: file://%s\n\n" %(out_file)
        try:
            output_fh = os.popen("%s -x -c -h %s -p %s -D o=infosys -y %s >/dev/null" %(command, config['BDII_HOSTNAME'], config['BDII_PORT'], config['BDII_PASSWD_FILE']['o=infosys']), 'w')
            output_fh.write(infosys_output)
            output_fh.close()
        except IOError, KeyError:
            log.error("Could not add compressed data to the database.")

        old_files=os.popen("ls -t %s/archive" % (config['BDII_VAR_DIR']) ).readlines()
        log.debug("Deleting old GZIP files")
        for file in old_files[config['BDII_ARCHIVE_SIZE']:]:
            os.remove("%s/archive/%s" % (config['BDII_VAR_DIR'],file.strip()))

        stats['db_update_stop'] = time.time()
        stats['update_stop'] = time.time()

        stats['UpdateTime'] = int(stats['update_stop']
                                  - stats['update_start'])
        stats['ReadTime'] = int(stats['read_old_stop']
                                  - stats['read_old_start'])
        stats['ProvidersTime'] = int(stats['providers_stop']
                                     - stats['providers_start'])
        stats['PluginsTime'] = int(stats['plugins_stop']
                                     - stats['plugins_start'])
        stats['QueryTime'] = int(stats['query_stop']
                                   - stats['query_start'])
        stats['DBUpdateTime'] = int(stats['db_update_stop']
                                   - stats['db_update_start'])
        stats['TotalEntries'] = len(old_dns) 
        stats['NewEntries'] =  len(ldif_add)
        stats['ModifiedEntries'] = len(ldif_modify_dns.keys())
        stats['DeletedEntries'] =  len(ldif_delete)
        stats['FailedAdds'] =  add_error_counter
        stats['FailedModifies'] = modify_error_counter
        stats['FailedDeletes'] = delete_error_counter

        for key in stats.keys():
            if ( key.find("_") == -1 ):
                log.info("%s: %i" % (key, stats[key]) )

        infosys_output=""
        if (len(old_ldif) == 0 ):
            log.debug("ldapadd o=infosys updatestats")
            command="ldapadd"

            infosys_output+="dn: Hostname=%s,o=infosys\n" %(config['BDII_HOSTNAME'])
            infosys_output+="objectClass: UpdateStats\n"
            infosys_output+="Hostname: %s\n" %(config['BDII_HOSTNAME'])
            for key in stats.keys():
                if ( key.find("_") == -1):
                    infosys_output+="%s: %i\n" %(key, stats[key])
            infosys_output+="\n"
        else:
            log.debug("ldapmodify o=infosys updatestats")
            command="ldapmodify"

            infosys_output+="dn: Hostname=%s,o=infosys\n" %(config['BDII_HOSTNAME'])
            infosys_output+="changetype: Modify\n"
            for key in stats.keys():
                if ( key.find("_") == -1):
                    infosys_output+="replace: %s\n" %(key)
                    infosys_output+="%s: %i\n" %(key, stats[key])
                    infosys_output+="-\n"
            infosys_output+="\n"
        try:
            output_fh = os.popen("%s -x -c -h %s -p %s -D o=infosys -y %s >/dev/null" %(command, config['BDII_HOSTNAME'], config['BDII_PORT'], config['BDII_PASSWD_FILE']['o=infosys']), 'w')
            output_fh.write(infosys_output)
            output_fh.close()
        except IOError, KeyError:
            log.error("Could not add stats entries to the database.")

        old_ldif = None
        new_ldif = None
        new_dns = None
        ldif_delete = None
        ldif_add = None
        ldif_modify = None

        log.info("Sleeping for %i seconds" %(int(config['BDII_BREATHE_TIME'])))
        time.sleep(config['BDII_BREATHE_TIME'])

if __name__ == '__main__':

    config=parse_options()
    config=get_config(config)
    if ( config['BDII_DAEMON'] ):
        create_daemon(config['BDII_LOG_FILE'])
        # Giving some time for the init.d script to finish
        time.sleep(3)
    else:
        # connect stderr to log file
        e = os.open(config['BDII_LOG_FILE'], os.O_WRONLY | os.O_APPEND | os.O_CREAT, 0644)
        os.dup2(e, 2)
        os.close(e)
        sys.stderr = os.fdopen(2, 'a', 0)
                        

    log=get_logger(config['BDII_LOG_FILE'],config['BDII_LOG_LEVEL'])
    main(config,log)