r-cran-hmisc 3.14-5-1 / usr / lib / R / site-library / Hmisc / NEWS

Changes in version 3.14-5 (2014-09-11)
   * latex.summaryM: fixed bug in caption with test=TRUE.  Thanks: Yonghao Pua
   * csv.get: uses data.table package's fread in place of read.csv if data.table is in effect
   * combined.levels: sensed all NA vector, now return non-factor numeric instead
   * dataframeReduce: handle all-NA factor variable
   * subplot: replaced with latest version from TeachingDemos package by Greg Snow
   * latexTabular: fixed error in example in help file; result is not a file
   * latex: another test added in tests/latex.s
   * summaryP: removed observations with a right-hand-side variable missing
   * latex.summaryP: fixed bug with wrong column labels due to reshape reordering columns coming from factor levels alphabetically instead of by original levels
   * format.df: added % & <= >= to list of characters handled, the last two by going into math mode
   * latex.summaryP: use blank if denominator 0, instead of NaN
   * summary.formula: fixed problem with deparse formula.  Thanks: Andreas Kiermeier
   * describe: added relative information measure for numeric variables - a measure of how continuous the variable is
   * wtd.table: detect duplications using duplicated() instead of diff(x) to handle Inf.  Thanks: Benjamin Tyner
   * DESCRIPTION, NAMESPACE: multiple function changes to work in R-devel

Changes in version 3.14-4 (2014-04-13)
   * rcspline.eval: stop new logic for ignoring outer values when there are many ties when there are also many ties on interior values.  Added new logic to use interior unique values of x when the number of unique x is small.
   * latexBuild: generalized with insert argument
   * latex.default: modified to use mods of latexBuild, fixed bug with caption.loc='bottom' (thanks: YacineH)
   * latex.default: fixed bug where comma did not appear after caption={} for ctable (thanks: Johannes Hofrichter)
   * tests: fit.mult.impute.bootstrap.r: added new example (thanks: Jane Cook)
   * fit.mult.impute: added call for fit.mult.impute in returned object, replacing call from fitter; makes update work for fit.mult.impute
   * summary.formula: fixed recognition of multiple left-hand-side variables to trigger call to summaryM (thanks: Kevin Thorpe)
   * summaryM: changed group label to '' instead of 0 for formulas like age + sex ~ 1
   * Ecdf: added what argument to all functions
   * nobsY: return constructed id vector
   * addMarginal: instead of .marginal. being logical, make it contain names of variables being marginalized over
   * mChoice.c: fixed some inconsistencies

Changes in version 3.14-3 (2014-03-02)
   * format.df: clarified in help file that col.just can contain specifications other than l,r,c, e.g., "p{3in}" to get paragraph formatting in a column.  Thanks: Ben Bolker
   * latex.default: added example for the above in tests
   * label.Surv: got units from inputAttributes in addition, and added type argument

Changes in version 3.14-2 (2014-02-26)
   * latex.default: improved logic using new function in Misc: latexBuild
	 * latex.default: fixed bug with ctable=TRUE with no caption by removing default label
   * latex.default: improved formatting for insert.top
   * latex.default: added tests, fixed insert.bottom
   * latex.summaryM: return stat summary key as legend attribute, use this according to insert.bottom argument
   * latex.summary.formula.response: fixed bug related to computation of cdec.  Thanks: Kevin Thorpe
   * latex.default: added new argument star: ctables uses this to spread over two columns when the LaTeX document is in \twocolumn mode.  Thanks:  David Whiting

Changes in version 3.14-1 (2014-02-25)
   * Added latexNeedle function
   * Change latexTherm, latexNeedle to use user LaTeX macro \tooltipn to do the pop-up
   * latex.default: changed line breaks around \end{tabular}
   * latex.summaryM: put insert.bottom text in minipage so \tooltip will not devote wide space to it
   * sas.get: added defaultencoding argument and logic (Thanks: Reinhold Koch)
   * plot.summaryP: omit tick marks for proportion > 1.0
   * format.df (used by latex): fixed na.blank logic for character var
   * latex: removed newlines when ending environments, added hyperref argument
   * latex: added center='centerline', fixed 'centering'
   * upData, cleanup.import, dataframeReduce: changed argument pr to print
   * rcspline.eval: added more evasive action in case of extreme ties

Changes in version 3.14-0 (2014-01-22)
   * Added trans argument to varclus
   * Removed recode, existsFunction functions, under.unix object, survfitKM, functions used only by S-Plus: comment, mem, mulbar.chart, p.sunflowers
   * as.category, is.category, untangle.special: removed
   * Removed reference to .R. from many functions
   * Remove oldClass, oldUnclass, getFunction
   * latex.default: changed 'rotate' to 'sideways' for ctable mode.  Thanks: Simon Zehnder <szehnder@uni-bonn.de>
   * gView: removed
   * ldBands: removed
   * summaryP: new function - graphical replacement for tables of proportions
   * ynbind: new function for combining related yes/no variables into a matrix with a label
   * added file argument to prn
   * summaryP: added autoarrange
   * added addMarginal and nobsY functions
   * pBlock: new function for blocking variables for summaryP
   * summaryP: changed text positioning to grid absolutes, added text.at argument
   * scat1d, histSpike: if grid used and y has grid units, fixed logic for frac
   * plsmo, panel.plsmo: added scat1d.opts argument
   * label.Surv, units.Surv: added, removed ::: in survival calls
   * summarize: added keepcolnames argument
   * Suppressed startup message unless options(Hverbose=TRUE) is set
   * summaryS: new function - multi-panel lattice xy and dot plots
   * summaryD: added ylab argument
   * dotchart3: quit letting left margin be less than pre-existing one
   * multLines: new function
   * Improved nobsY to respect subject IDs when counting number of subjects, and to return an attribute 'formula' without id variable; changed bpplotM, summaryP, summaryS to use this
   * Removed nobsY calculations from bpplotM, summaryP, summaryS, enhanced nobsY to allow stratification by treatment
   * panel.bpplot: added violin and violin.opts arguments
   * summaryS: added medvPanel support during-plot vertical violin plots
   * plot.summaryP: padded x-axis limits
   * latexTabular: added translate and hline arguments; moved to its own file and help page
   * latexTherm: added tooltip using LaTeX ocgtools package
   * summaryP: stopped reversing order of panels
   * summaryM: added table.env argument, changed how model.frame built
   * latex.summaryM: changed to print proportions by default, added round='auto'
   * character.table: added xpd=NA; thanks: Dale
   * summaryP: added latex method
   * latex.default: added insert.top argument
   * summaryM: added stratification (multiple tables)

Changes in version 3.13-0 (2013-11-18)
   * Changed n location (nloc argument) in bpplotM
   * Improved dotchart3 to better compute string widths when there is a mixture of expressions and regular strings for auxdata/auxtitle
   * Changed rlegend to not take logs if log axes are in effect.  Fixes Ecdf(..., log='x', label.curves=list(keys=1:3)).  Thanks: Bayazid Sarker <sarkarbayazid@gmail.com>
	 * Extended non-panel (regular) version of plsmo to handle matrix y
   * Likewise for summaryRc
   * Added xlim to bpplotM
   * Added latexTherm function to create LaTeX picture environments to add a series of thermometers to LaTeX text
   * Fixed deff to handle the case where R^2 = 1.  Thanks: Matthieu Stigler <matthieu.stigler@gmail.com>
   * Added new test file for wtd.mean, wtd.quantile
   * New test aregImpute3.r for glm Poisson regression
   * Improved describe.vector to format single unique values
   * Took away warning about var, s.e., t, p in fit.mult.impute
   * Switched from subversion to github repository
   * Changed maintainer from Charles Dupont to Frank Harrell
   * Changed wtd.loess.noiter to use loess instead of stats:::simpleLoess