/usr/lib/R/site-library/rtracklayer/INDEX is in r-bioc-rtracklayer 1.24.2-1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 | BEDFile-class BEDFile objects
BasicTrackLine-class Class "BasicTrackLine"
Bed15TrackLine-class Class "Bed15TrackLine"
BigWigFile-class BigWig Import and Export
BigWigSelection-class Selection of ranges and columns
BrowserSession-class Class "BrowserSession"
BrowserView-class Class "BrowserView"
BrowserViewList-class Lists of BrowserView
Chain-class Chain objects
FastaFile-class FastaFile objects
GFFFile-class GFFFile objects
GRangesForUCSCGenome GRanges for a Genome
GenomicSelection Genomic data selection
GraphTrackLine-class Class "GraphTrackLine"
Quickload-class Quickload Access
QuickloadGenome-class Quickload Genome Access
RTLFile-class RTLFile objects
RangedData-methods Data on a Genome
RangesList-methods Ranges on a Genome
TrackDb-class Track Databases
TrackLine-class Class "TrackLine"
TwoBitFile-class 2bit Files
UCSCData-class Class "UCSCData"
UCSCFile-class UCSCFile objects
UCSCSchema-class UCSC Schema
UCSCSession-class Class "UCSCSession"
UCSCTableQuery-class Querying UCSC Tables
UCSCTrackModes-class Class "UCSCTrackModes"
UCSCView-class Class "UCSCView"
WIGFile-class WIG Import and Export
activeView-methods Accessing the active view
asBED Coerce to BED structure
asGFF Coerce to GFF structure
blocks-methods Get blocks/exons
browseGenome Browse a genome
browserSession-methods
Get a genome browser session
browserView-methods Getting browser views
browserViews-methods Getting the browser views
cpneTrack CPNE1 SNP track
export Import and export
export,ANY,BamFile,ANY-method
Export to BAM Files
genomeBrowsers Get available genome browsers
import,TabixFile,character,ANY-method
TabixFile Import
liftOver Lift intervals between genome builds
sequence<--methods Load a sequence
targets microRNA target sites
track<--methods Laying tracks
trackNames Accessing track names
ucscGenomes Get available genomes on UCSC
ucscTrackModes-methods
Accessing UCSC track modes
wigToBigWig Convert WIG to BigWig
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