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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 | Package: rtracklayer
Title: R interface to genome browsers and their annotation tracks
Version: 1.24.2
Author: Michael Lawrence, Vince Carey, Robert Gentleman
Depends: R (>= 2.10), methods, GenomicRanges (>= 1.15.26)
Imports: XML (>= 1.98-0), BiocGenerics (>= 0.7.7), IRanges (>=
1.19.34), XVector (>= 0.1.3), GenomicRanges (>= 1.15.26),
Biostrings (>= 2.29.18), BSgenome (>= 1.23.1), RCurl (>=
1.4-2), Rsamtools (>= 1.13.1), GenomicAlignments, tools
Suggests: humanStemCell, microRNA (>= 1.1.1), genefilter, limma,
org.Hs.eg.db, BSgenome.Hsapiens.UCSC.hg19,
TxDb.Hsapiens.UCSC.hg19.knownGene, hgu133plus2.db
LinkingTo: IRanges, XVector
Description: Extensible framework for interacting with multiple genome
browsers (currently UCSC built-in) and manipulating
annotation tracks in various formats (currently GFF, BED, bedGraph, BED15,
WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the
supported browsers, as well as query and modify the browser state, such as the
current viewport.
Maintainer: Michael Lawrence <michafla@gene.com>
License: Artistic-2.0
ExtraLicenses: The files in the 'src/ucsc' directory are licensed for
all use by Jim Kent, in a manner compatible with the Artistic
2.0 license.
Collate: io.R web.R ranges.R trackDb.R browser.R ucsc.R gff.R bed.R
wig.R utils.R bigWig.R chain.R quickload.R twobit.R fasta.R
tabix.R bam.R trackTable.R index.R compression.R
test_rtracklayer_package.R
biocViews: Annotation,Visualization,DataImport
Packaged: 2014-06-05 05:44:44 UTC; biocbuild
Built: R 3.1.1; x86_64-pc-linux-gnu; 2014-08-08 11:43:35 UTC; unix
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