This file is indexed.

/usr/include/sofa/component/misc/ParticleSource.h is in libsofa1-dev 1.0~beta4-9.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
/******************************************************************************
*       SOFA, Simulation Open-Framework Architecture, version 1.0 beta 4      *
*                (c) 2006-2009 MGH, INRIA, USTL, UJF, CNRS                    *
*                                                                             *
* This library is free software; you can redistribute it and/or modify it     *
* under the terms of the GNU Lesser General Public License as published by    *
* the Free Software Foundation; either version 2.1 of the License, or (at     *
* your option) any later version.                                             *
*                                                                             *
* This library is distributed in the hope that it will be useful, but WITHOUT *
* ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or       *
* FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License *
* for more details.                                                           *
*                                                                             *
* You should have received a copy of the GNU Lesser General Public License    *
* along with this library; if not, write to the Free Software Foundation,     *
* Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301 USA.          *
*******************************************************************************
*                               SOFA :: Modules                               *
*                                                                             *
* Authors: The SOFA Team and external contributors (see Authors.txt)          *
*                                                                             *
* Contact information: contact@sofa-framework.org                             *
******************************************************************************/
//
// C++ Interface: ParticleSource
//
// Description:
//
//
// Author: Jeremie Allard, (C) 2007
//
// Copyright: See COPYING file that comes with this distribution
//
//
#ifndef SOFA_COMPONENT_MISC_PARTICLESOURCE_H
#define SOFA_COMPONENT_MISC_PARTICLESOURCE_H

#include <sofa/core/componentmodel/behavior/Constraint.h>
#include <sofa/core/componentmodel/behavior/MechanicalState.h>
#include <sofa/core/objectmodel/Event.h>
#include <sofa/simulation/common/AnimateBeginEvent.h>
#include <sofa/simulation/common/AnimateEndEvent.h>
#include <sofa/component/topology/PointSubset.h>
#include <sofa/component/topology/PointSetTopologyModifier.h>
#include <sofa/component/topology/PointSetTopologyChange.h>
#include <vector>
#include <iterator>
#include <iostream>
#include <ostream>
#include <algorithm>

namespace sofa
{

namespace component
{

template<class TDataTypes>
class ParticleSource : public core::componentmodel::behavior::Constraint<TDataTypes>, public virtual core::objectmodel::BaseObject
{
public:
    typedef TDataTypes DataTypes;
    typedef typename DataTypes::Real Real;
    typedef typename DataTypes::Coord Coord;
    typedef typename DataTypes::VecCoord VecCoord;
    typedef typename DataTypes::Deriv Deriv;
    typedef typename DataTypes::VecDeriv VecDeriv;
    typedef helper::vector<Real> VecDensity;
    
    typedef core::componentmodel::behavior::MechanicalState<DataTypes> MechanicalModel;
    
    Data<Coord> f_translation;
    Data<Real> f_scale;
    Data< helper::vector<Coord> > f_center;
    Data<Coord> f_radius;
    Data<Deriv> f_velocity;
    Data<Real> f_delay;
    Data<Real> f_start;
    Data<Real> f_stop;

    ParticleSource()
    : f_translation(initData(&f_translation,Coord(),"translation","translation applied to center(s)") )
    , f_scale(initData(&f_scale,(Real)1.0,"scale","scale applied to center(s)") )
    , f_center(initData(&f_center, "center","Source center(s)") )
    , f_radius(initData(&f_radius, Coord(), "radius", "Source radius"))
    , f_velocity(initData(&f_velocity, Deriv(), "velocity", "Particle initial velocity"))
    , f_delay(initData(&f_delay, (Real)0.01, "delay", "Delay between particles creation"))
    , f_start(initData(&f_start, (Real)0, "start", "Source starting time"))
    , f_stop(initData(&f_stop, (Real)1e10, "stop", "Source stopping time"))
    {
        f_listening.setValue(true);
        f_center.beginEdit()->push_back(Coord()); f_center.endEdit();
    }
    
    virtual ~ParticleSource()
    {
    }
    
    int N;
    Real lasttime;
    //int lastparticle;
    topology::PointSubset lastparticles;
    helper::vector<Coord> lastpos;
    
    virtual void init()
    {
        this->core::componentmodel::behavior::Constraint<TDataTypes>::init();
        if (!this->mstate) return;
        N = f_center.getValue().size();
        lasttime = f_start.getValue()-f_delay.getValue();
        //lastparticle = -1;
        lastpos.resize(N);

	lastparticles.setTestFunction(PSTestNewPointFunction);
	lastparticles.setRemovalFunction(PSRemovalFunction);

	lastparticles.setTestParameter( (void *) this );
	lastparticles.setRemovalParameter( (void *) this );

        sout << "ParticleSource: center="<<f_center.getValue()<<" radius="<<f_radius.getValue()<<" delay="<<f_delay.getValue()<<" start="<<f_start.getValue()<<" stop="<<f_stop.getValue()<<sendl;
    }
    
    virtual void reset()
    {
        this->mstate->resize(1);
        lasttime = f_start.getValue()-f_delay.getValue();
        lastparticles.clear();
        lastpos.clear();
    }
    
    Real rrand()
    {
        return (Real)(rand()*1.0/RAND_MAX);
    }
    
    virtual void animateBegin(double /*dt*/, double time)
    {
        //sout << "ParticleSource: animate begin time="<<time<<sendl;
        if (!this->mstate) return;
        if (time < f_start.getValue() || time > f_stop.getValue()) return;
        int i0 = this->mstate->getX()->size();
        if (i0==1) i0=0; // ignore the first point if it is the only one
        int nparticles = (int)((time - lasttime) / f_delay.getValue());
        if (nparticles>0)
        {
            //sout << "ParticleSource: Creating "<<nparticles<<" particles, total "<<i0+nparticles<<" particles."<<sendl;
            sofa::core::componentmodel::topology::BaseMeshTopology* _topology;
			_topology = this->getContext()->getMeshTopology();	

			sofa::component::topology::PointSetTopologyModifier* pointMod; 
			this->getContext()->get(pointMod);	

            if (pointMod != NULL)
            {
                int n = i0+nparticles*N - this->mstate->getX()->size();
                pointMod->addPointsWarning(n);
                pointMod->addPointsProcess(n);
                pointMod->propagateTopologicalChanges();
            }
            else
            {
                this->mstate->resize(i0+nparticles*N);
            }
            VecCoord& x = *this->mstate->getX();
            VecDeriv& v = *this->mstate->getV();
            for (int i=0; i<nparticles; i++)
            {
                lasttime += f_delay.getValue();
                int lastparticle = i0+i*N;
                lastparticles.resize(N);
                for (int s=0; s<N; s++)
                {
                    lastpos[s] = f_center.getValue()[s]*f_scale.getValue() + f_translation.getValue();
                    for (unsigned int c = 0; c < lastpos[s].size(); c++)
                        lastpos[s][c] += f_radius.getValue()[c] * rrand();
                    x[lastparticle+s] = lastpos[s];
                    v[lastparticle+s] = f_velocity.getValue();
                    x[lastparticle+s] += v[lastparticle+s]*(time - lasttime); // account for particle initial motion
                    lastparticles[s] = lastparticle+s;
                }
            }
        }
    }
    
/// Handle topological changes
void handleTopologyChange()
{
    sofa::core::componentmodel::topology::BaseMeshTopology* topology = getContext()->getMeshTopology();
    std::list<const sofa::core::componentmodel::topology::TopologyChange *>::const_iterator itBegin=topology->firstChange();
    std::list<const sofa::core::componentmodel::topology::TopologyChange *>::const_iterator itEnd=topology->lastChange();
    if (itBegin != itEnd)
    {
        if (this->f_printLog.getValue())
        {
            sout << "ParticleSource: handleTopologyChange()"<<sendl;
            sout << "lastparticles = ";
            std::copy(lastparticles.begin(),lastparticles.end(),std::ostream_iterator<unsigned int>(sout," "));
            sout << sendl;
        }
        int s1 = lastparticles.size();
        lastparticles.handleTopologyEvents(itBegin, itEnd, this->mstate->getSize());
        int s2 = lastparticles.size();
        if (s2 > s1) sout << "ParticleSource: handleTopologyChange(): "<<s2-s1<<" points added!"<<sendl;
        if (s2 < s1) sout << "ParticleSource: handleTopologyChange(): "<<s1-s2<<" points removed!"<<sendl;
        if (this->f_printLog.getValue())
        {
            sout << "NEW lastparticles = ";
            std::copy(lastparticles.begin(),lastparticles.end(),std::ostream_iterator<unsigned int>(sout," "));
            sout << sendl;
        }
    }
}

    virtual void projectResponse(VecDeriv& res) ///< project dx to constrained space
    {
        if (!this->mstate) return;
        if (lastparticles.empty()) return;
        //sout << "ParticleSource: projectResponse of last particle ("<<lastparticle<<")."<<sendl;
        double time = getContext()->getTime();
        if (time < f_start.getValue() || time > f_stop.getValue()) return;
        // constraint the last value
        for (unsigned int s=0; s<lastparticles.size(); s++)
	  {
	    //HACK: TODO understand why these conditions can be reached
	    if (lastparticles[s] >= res.size()) continue;

            res[lastparticles[s]] = Deriv();
	  }
    }
    
    virtual void projectVelocity(VecDeriv& res) ///< project dx to constrained space (dx models a velocity)
    {
        if (!this->mstate) return;
        if (lastparticles.empty()) return;
        double time = getContext()->getTime();
        if (time < f_start.getValue() || time > f_stop.getValue()) return;
        // constraint the last value
        for (unsigned int s=0; s<lastparticles.size(); s++)
	  {
	    //HACK: TODO understand why these conditions can be reached
	    if ( lastparticles[s] >= res.size() ) continue;
            res[lastparticles[s]] = f_velocity.getValue();
	  }
    }
    
    virtual void projectPosition(VecCoord& x) ///< project x to constrained space (x models a position)
    {
        if (!this->mstate) return;
        if (lastparticles.empty()) return;
        double time = getContext()->getTime();
        if (time < f_start.getValue() || time > f_stop.getValue()) return;
        // constraint the last value
        for (unsigned int s=0; s<lastparticles.size(); s++)
        {
	  //HACK: TODO understand why these conditions can be reached
	  if (lastpos.size() >= s || lastparticles[s] >= x.size()) continue;
            x[lastparticles[s]] = lastpos[s];
            x[lastparticles[s]] += f_velocity.getValue()*(time - lasttime); // account for particle initial motion
        }
    }
    
    virtual void animateEnd(double /*dt*/, double /*time*/)
    {
        
    }
    
    virtual void handleEvent(sofa::core::objectmodel::Event* event)
    {
        if (simulation::AnimateBeginEvent* ev = dynamic_cast<simulation::AnimateBeginEvent*>(event))
            animateBegin(ev->getDt(), getContext()->getTime());
        if (simulation::AnimateEndEvent* ev = dynamic_cast<simulation::AnimateEndEvent*>(event))
            animateEnd(ev->getDt(), getContext()->getTime());
    }


protected :
    static bool PSTestNewPointFunction(int, void*, const sofa::helper::vector< unsigned int > &, const sofa::helper::vector< double >& )
    {
        return false;
    }

    static void PSRemovalFunction (int index, void* p)
    {
        ParticleSource* ps = (ParticleSource*)p;
        topology::PointSubset::const_iterator it = std::find(ps->lastparticles.begin(),ps->lastparticles.end(), (unsigned int)index);
        if (it != ps->lastparticles.end())
        {
            ps->lastpos.erase( ps->lastpos.begin()+(it-ps->lastparticles.begin()) );
            //ps->lastparticles.getArray().erase(it);
            helper::removeValue(ps->lastparticles,(unsigned int)index);
        }
    }

};


} // namespace component

} // namespace sofa

#endif