This file is indexed.

/usr/include/sbml/packages/render/extension/RenderSBMLDocumentPlugin.h is in libsbml5-dev 5.10.0+dfsg-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
/**
 * @file:   RenderSBMLDocumentPlugin.h
 * @brief:  Implementation of the RenderSBMLDocumentPlugin class
 * @author: SBMLTeam
 *
 * <!--------------------------------------------------------------------------
 * This file is part of libSBML.  Please visit http://sbml.org for more
 * information about SBML, and the latest version of libSBML.
 *
 * Copyright (C) 2009-2013 jointly by the following organizations:
 *     1. California Institute of Technology, Pasadena, CA, USA
 *     2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
 *
 * Copyright (C) 2006-2008 by the California Institute of Technology,
 *     Pasadena, CA, USA 
 *
 * Copyright (C) 2002-2005 jointly by the following organizations:
 *     1. California Institute of Technology, Pasadena, CA, USA
 *     2. Japan Science and Technology Agency, Japan
 *
 * This library is free software; you can redistribute it and/or modify it
 * under the terms of the GNU Lesser General Public License as published by
 * the Free Software Foundation.  A copy of the license agreement is provided
 * in the file named "LICENSE.txt" included with this software distribution
 * and also available online as http://sbml.org/software/libsbml/license.html
 * ------------------------------------------------------------------------ -->
 */


#ifndef RenderSBMLDocumentPlugin_H__
#define RenderSBMLDocumentPlugin_H__


#include <sbml/common/extern.h>


#ifdef __cplusplus


#include <sbml/extension/SBMLDocumentPlugin.h>
#include <sbml/packages/render/extension/RenderExtension.h>


LIBSBML_CPP_NAMESPACE_BEGIN


class LIBSBML_EXTERN RenderSBMLDocumentPlugin : public SBMLDocumentPlugin
{
public:

  /**
   * Creates a new RenderSBMLDocumentPlugin
   */
  RenderSBMLDocumentPlugin(const std::string& uri, const std::string& prefix, 
                                 RenderPkgNamespaces* multins);


  /**
   * Copy constructor for RenderSBMLDocumentPlugin.
   *
   * @param orig; the RenderSBMLDocumentPlugin instance to copy.
   */
  RenderSBMLDocumentPlugin(const RenderSBMLDocumentPlugin& orig);


   /**
   * Assignment operator for RenderSBMLDocumentPlugin.
   *
   * @param rhs; the object whose values are used as the basis
   * of the assignment
   */
  RenderSBMLDocumentPlugin& operator=(const RenderSBMLDocumentPlugin& rhs);


   /**
   * Creates and returns a deep copy of this RenderSBMLDocumentPlugin object.
   *
   * @return a (deep) copy of this RenderSBMLDocumentPlugin object.
   */
  virtual RenderSBMLDocumentPlugin* clone () const;


   /**
   * Destructor for RenderSBMLDocumentPlugin.
   */
  virtual ~RenderSBMLDocumentPlugin();


 #ifndef SWIG

  /** @cond doxygenLibsbmlInternal */

  /**
   * Reads the attributes of corresponding package in SBMLDocument element
   */
  virtual void readAttributes (const XMLAttributes& attributes, 
                               const ExpectedAttributes& expectedAttributes);


  /** @endcond doxygenLibsbmlInternal */


#endif // SWIG

  /** @cond doxygenLibsbmlInternal */

  /**
   * Returns boolean based on whether flattening of a comp model has been implemented.
   *
   * @returns @c true if flattening for composed models has been implemented,
   * false otherwise.
   */
  virtual bool isCompFlatteningImplemented() const;


  /** @endcond doxygenLibsbmlInternal */


  /** @cond doxygenLibsbmlInternal */

  /**
   * Check consistency function.
   */
#if (0)
  virtual unsigned int checkConsistency();
#endif

  /** @endcond doxygenLibsbmlInternal */


  /** @cond doxygenLibsbmlInternal */

  /**
   * Accepts the SBMLVisitor.
   */
//  virtual bool accept(SBMLVisitor& v) const;


   /** @endcond doxygenLibsbmlInternal */


protected:

  /** @cond doxygenLibsbmlInternal */

  /** @endcond doxygenLibsbmlInternal */


};




LIBSBML_CPP_NAMESPACE_END


#endif /* __cplusplus */
#endif /* RenderSBMLDocumentPlugin_H__ */