/usr/include/sbml/packages/layout/util/LayoutAnnotation.h is in libsbml5-dev 5.10.0+dfsg-1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 | /**
* @file LayoutAnnotation.h
* @brief Layout annotation I/O
* @author Ralph Gauges
*
* <!--------------------------------------------------------------------------
* This file is part of libSBML. Please visit http://sbml.org for more
* information about SBML, and the latest version of libSBML.
*
* Copyright (C) 2013-2014 jointly by the following organizations:
* 1. California Institute of Technology, Pasadena, CA, USA
* 2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
* 3. University of Heidelberg, Heidelberg, Germany
*
* Copyright (C) 2009-2013 jointly by the following organizations:
* 1. California Institute of Technology, Pasadena, CA, USA
* 2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
*
* Copyright (C) 2004-2008 by European Media Laboratories Research gGmbH,
* Heidelberg, Germany
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online as http://sbml.org/software/libsbml/license.html
* ------------------------------------------------------------------------ -->
*/
#ifndef LayoutAnnotation_h
#define LayoutAnnotation_h
#include <sbml/common/extern.h>
#include <sbml/common/sbmlfwd.h>
#include <sbml/xml/XMLAttributes.h>
#include <sbml/SpeciesReference.h>
#include <sbml/packages/layout/sbml/Layout.h>
#ifdef __cplusplus
#include <limits>
#include <iomanip>
#include <string>
#include <sstream>
#include <cstdlib>
LIBSBML_CPP_NAMESPACE_BEGIN
/**
* takes an annotation that has been read into the model
* identifies the RDF elements
* and creates a List of Layouts from the annotation
*/
LIBSBML_EXTERN
void parseLayoutAnnotation(XMLNode * annotation, ListOfLayouts& layouts);
/**
* Takes an XMLNode and tries to find the layout annotation node and deletes it if it was found.
*/
LIBSBML_EXTERN
XMLNode* deleteLayoutAnnotation(XMLNode* pAnnotation);
/**
* Creates an XMLNode that represents the layouts of the model from the given Model object.
*/
LIBSBML_EXTERN
XMLNode* parseLayouts(const Model* pModel);
/**
* takes an annotation that has been read into the species reference
* identifies the id elements and set the id of the species reference
*/
LIBSBML_EXTERN
void
parseSpeciesReferenceAnnotation(XMLNode * annotation, SimpleSpeciesReference& sr);
/**
* Takes an XMLNode and tries to find the layoutId annotation node and deletes it if it was found.
*/
LIBSBML_EXTERN
XMLNode* deleteLayoutIdAnnotation(XMLNode* pAnnotation);
/**
* Creates an XMLNode that represents the layoutId annotation of the species reference from the given SpeciesReference object.
*/
LIBSBML_EXTERN
XMLNode* parseLayoutId(const SimpleSpeciesReference* sr);
LIBSBML_CPP_NAMESPACE_END
#endif /* __cplusplus */
#endif /** LayoutAnnotation_h **/
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