/usr/include/sbml/packages/layout/extension/LayoutSpeciesReferencePlugin.h is in libsbml5-dev 5.10.0+dfsg-1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 | /**
* @file LayoutSpeciesReferencePlugin.h
* @brief Definition of LayoutSpeciesReferencePlugin, the plugin
* class of layout package (Level2) for the SpeciesReference and
* ModifierSpeciesReference elements.
* @author Akiya Jouraku
*
* <!--------------------------------------------------------------------------
* This file is part of libSBML. Please visit http://sbml.org for more
* information about SBML, and the latest version of libSBML.
*
* Copyright (C) 2013-2014 jointly by the following organizations:
* 1. California Institute of Technology, Pasadena, CA, USA
* 2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
* 3. University of Heidelberg, Heidelberg, Germany
*
* Copyright (C) 2009-2013 jointly by the following organizations:
* 1. California Institute of Technology, Pasadena, CA, USA
* 2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
*
* Copyright (C) 2006-2008 by the California Institute of Technology,
* Pasadena, CA, USA
*
* Copyright (C) 2002-2005 jointly by the following organizations:
* 1. California Institute of Technology, Pasadena, CA, USA
* 2. Japan Science and Technology Agency, Japan
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online as http://sbml.org/software/libsbml/license.html
* ------------------------------------------------------------------------ -->
*
* @class LayoutSpeciesReferencePlugin
* @sbmlbrief{layout} Implementation of the 'layout' package extention to the
* %SpeciesReference construct.
*/
#ifndef LayoutSpeciesReferencePlugin_h
#define LayoutSpeciesReferencePlugin_h
#include <sbml/common/sbmlfwd.h>
#include <sbml/SBMLErrorLog.h>
#include <sbml/SpeciesReference.h>
#include <sbml/xml/XMLInputStream.h>
#include <sbml/xml/XMLOutputStream.h>
#include <sbml/extension/SBasePlugin.h>
#include <sbml/packages/layout/sbml/Layout.h>
#include <sbml/packages/layout/extension/LayoutExtension.h>
#ifdef __cplusplus
LIBSBML_CPP_NAMESPACE_BEGIN
class LIBSBML_EXTERN LayoutSpeciesReferencePlugin : public SBasePlugin
{
public:
/**
* Constructor
*/
LayoutSpeciesReferencePlugin (const std::string &uri, const std::string &prefix,
LayoutPkgNamespaces* layoutns);
/**
* Copy constructor. Creates a copy of this SBase object.
*/
LayoutSpeciesReferencePlugin(const LayoutSpeciesReferencePlugin& orig);
/**
* Destroy this object.
*/
virtual ~LayoutSpeciesReferencePlugin ();
/**
* Assignment operator for LayoutSpeciesReferencePlugin.
*/
LayoutSpeciesReferencePlugin& operator=(const LayoutSpeciesReferencePlugin& orig);
/**
* Creates and returns a deep copy of this LayoutSpeciesReferencePlugin object.
*
* @return a (deep) copy of this LayoutSpeciesReferencePlugin object
*/
virtual LayoutSpeciesReferencePlugin* clone () const;
#ifndef SWIG
// ---------------------------------------------------------
//
// overridden virtual functions for reading/writing/checking
// attributes
//
// ---------------------------------------------------------
/** @cond doxygenLibsbmlInternal */
/**
* Parses Layout Extension of SBML Level 2
*/
virtual bool readOtherXML (SBase* parentObject, XMLInputStream& stream);
/** @endcond */
/** @cond doxygenLibsbmlInternal */
/**
* This function is a bit tricky.
* This function is used only for setting annotation element of layout
* extension for SBML Level2 because annotation element needs to be
* set before invoking the above writeElements function.
* Thus, no attribute is written by this function.
*/
virtual void writeAttributes (XMLOutputStream& stream) const;
/** @endcond */
#endif //SWIG
};
LIBSBML_CPP_NAMESPACE_END
#endif /* __cplusplus */
#endif /* LayoutSpeciesReferencePlugin_h */
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