/usr/include/sbml/packages/comp/validator/constraints/SubmodelReferenceCycles.h is in libsbml5-dev 5.10.0+dfsg-1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 | /**
* @cond doxygenLibsbmlInternal
*
* @file SubmodelReferenceCycles.h
* @brief Ensures unique variables assigned by rules and events
* @author Sarah Keating
*
* <!--------------------------------------------------------------------------
* This file is part of libSBML. Please visit http://sbml.org for more
* information about SBML, and the latest version of libSBML.
*
* Copyright (C) 2013-2014 jointly by the following organizations:
* 1. California Institute of Technology, Pasadena, CA, USA
* 2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
* 3. University of Heidelberg, Heidelberg, Germany
*
* Copyright 2011-2012 jointly by the following organizations:
* 1. California Institute of Technology, Pasadena, CA, USA
* 2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
*
* This library is free software; you can redistribute it and/or modify it
* under the terms of the GNU Lesser General Public License as published by
* the Free Software Foundation. A copy of the license agreement is provided
* in the file named "LICENSE.txt" included with this software distribution
* and also available online as http://sbml.org/software/libsbml/license.html
* ---------------------------------------------------------------------- -->*/
#ifndef SubmodelReferenceCycles_h
#define SubmodelReferenceCycles_h
#ifdef __cplusplus
#include <string>
#include <sbml/validator/VConstraint.h>
#include <sbml/util/IdList.h>
LIBSBML_CPP_NAMESPACE_BEGIN
typedef std::multimap<const std::string, std::string> IdMap;
typedef IdMap::iterator IdIter;
typedef std::pair<IdIter, IdIter> IdRange;
class SubmodelReferenceCycles: public TConstraint<Model>
{
public:
/**
* Creates a new Constraint with the given constraint id.
*/
SubmodelReferenceCycles (unsigned int id, Validator& v);
/**
* Destroys this Constraint.
*/
virtual ~SubmodelReferenceCycles ();
protected:
virtual void check_ (const Model& m, const Model& object);
void addAllReferences (const Model* m);
void addAllExternalReferences(const SBMLDocument* doc,
std::string location);
/* create pairs of ids that depend on each other */
void addModelReferences(const std::string &id,
const CompModelPlugin* modelPlug);
void addExtModelReferences(const std::string &id,
const CompSBMLDocumentPlugin* docPlug,
const CompModelPlugin* modelPlug);
void determineAllDependencies();
/* helper function to check if a pair already exists */
bool alreadyExistsInMap(IdMap map,
std::pair<const std::string, std::string> dependency);
/* find cycles in the map of dependencies */
void determineCycles(const Model& m);
/**
* functions for logging messages about the cycle
*/
void logCycle (const Model& m, std::string id, std::string id1);
IdMap mIdMap;
IdList mDocumentsHandled;
};
LIBSBML_CPP_NAMESPACE_END
#endif /* __cplusplus */
#endif /* SubmodelReferenceCycles_h */
/** @endcond */
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