/usr/include/relion-1.3/src/particle_polisher_mpi.h is in librelion+mpi-dev 1.3+dfsg-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 | /***************************************************************************
*
* Author: "Sjors H.W. Scheres"
* MRC Laboratory of Molecular Biology
*
* This program is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* This complete copyright notice must be included in any revised version of the
* source code. Additional authorship citations may be added, but existing
* author citations must be preserved.
***************************************************************************/
#ifndef PARTICLE_POLISHER_MPI_H_
#define PARTICLE_POLISHER_MPI_H_
#include "src/mpi.h"
#include "src/parallel.h"
#include "src/particle_polisher.h"
class ParticlePolisherMpi : public ParticlePolisher
{
private:
MpiNode *node;
public:
/** Destructor, calls MPI_Finalize */
~ParticlePolisherMpi()
{
delete node;
}
/** Read
* This could take care of mpi-parallelisation-dependent variables
*/
void read(int argc, char **argv);
// Parallelized fit the beam-induced translations for all average micrographs
void fitMovementsAllMicrographs();
// Parallelized calculation of B-factors for single-frame reconstructions
void calculateAllSingleFrameReconstructionsAndBfactors();
// Parallelized movie frame re-alignment for all micrographs
void polishParticlesAllMicrographs();
// Calculate two half-reconstructions from shiny particles and calculate FSC-weighted average map, store that in refvol
void reconstructShinyParticlesAndFscWeight(int ipass);
// Parallelized optimisation of beamtilt for all micrographs
void optimiseBeamTilt();
// Parallelized run function
void run();
};
#endif /* PARTICLE_POLISHER_MPI_H_ */
|