/usr/include/OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderDefs.h is in libopenms-dev 1.11.1-5.
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// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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//
// --------------------------------------------------------------------------
// $Maintainer: Clemens Groepl $
// $Authors: $
// --------------------------------------------------------------------------
#ifndef OPENMS_TRANSFORMATIONS_FEATUREFINDER_FEATUREFINDERDEFS_H
#define OPENMS_TRANSFORMATIONS_FEATUREFINDER_FEATUREFINDERDEFS_H
#include <OpenMS/DATASTRUCTURES/IsotopeCluster.h>
#include <OpenMS/DATASTRUCTURES/String.h>
#include <OpenMS/CONCEPT/Exception.h>
#include <OpenMS/CONCEPT/GlobalExceptionHandler.h>
namespace OpenMS
{
// forward declaration
class FeatureFinder;
/**@brief The purpose of this struct is to provide definitions of classes and typedefs which are used throughout all FeatureFinder classes. */
struct OPENMS_DLLAPI FeatureFinderDefs
{
/// Index to peak consisting of two UInts (scan index / peak index)
typedef IsotopeCluster::IndexPair IndexPair;
/// Index to peak consisting of two UInts (scan index / peak index) with charge information
typedef IsotopeCluster::ChargedIndexSet ChargedIndexSet;
/// A set of peak indices
typedef IsotopeCluster::IndexSet IndexSet;
/// Flags that indicate if a peak is already used in a feature
enum Flag {UNUSED, USED};
/// Exception that is thrown if a method an invalid IndexPair is given
class OPENMS_DLLAPI NoSuccessor :
public Exception::BaseException
{
public:
NoSuccessor(const char * file, int line, const char * function, const IndexPair & index) :
BaseException(file, line, function, "NoSuccessor", "no successor/predecessor"),
index_(index)
{
what_ = String("there is no successor/predecessor for the given Index: ") + index_.first + "/" + index_.second;
Exception::GlobalExceptionHandler::getInstance().setMessage(what_);
}
virtual ~NoSuccessor() throw()
{
}
protected:
IndexPair index_; // index without successor/predecessor
};
};
}
#endif // OPENMS_TRANSFORMATIONS_FEATUREFINDER_FEATUREFINDERDEFS_H
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