libopenms-dev 1.11.1-5 / usr / include / OpenMS / METADATA / InstrumentSettings.h

// --------------------------------------------------------------------------
//                   OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
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// $Maintainer: Andreas Bertsch $
// $Authors: Marc Sturm $
// --------------------------------------------------------------------------

#ifndef OPENMS_METADATA_INSTRUMENTSETTINGS_H
#define OPENMS_METADATA_INSTRUMENTSETTINGS_H

#include <OpenMS/METADATA/ScanWindow.h>
#include <OpenMS/METADATA/IonSource.h>

namespace OpenMS
{
  /**
      @brief Description of the settings a MS Instrument was run with.

      @ingroup Metadata
  */
  class OPENMS_DLLAPI InstrumentSettings :
    public MetaInfoInterface
  {
public:
    /// scan mode
    enum ScanMode
    {
      UNKNOWN,                      ///< Unknown scan method
      MASSSPECTRUM,       ///< general spectrum type
      MS1SPECTRUM,              ///< full scan mass spectrum, is a "mass spectrum" @n Synonyms: 'full spectrum', 'Q1 spectrum', 'Q3 spectrum', 'Single-Stage Mass Spectrometry'
      MSNSPECTRUM,        ///< MS2+ mass spectrum, is a "mass spectrum"
      SIM,                              ///< Selected ion monitoring scan @n Synonyms: 'Multiple ion monitoring scan', 'SIM scan', 'MIM scan'
      SRM,                              ///< Selected reaction monitoring scan @n Synonyms: 'Multiple reaction monitoring scan', 'SRM scan', 'MRM scan'
      CRM,                              ///< Consecutive reaction monitoring scan @n Synonyms: 'CRM scan'
      CNG,                              ///< Constant neutral gain scan @n Synonyms: 'CNG scan'
      CNL,                              ///< Constant neutral loss scan @n Synonyms: 'CNG scan'
      PRECURSOR,                ///< Precursor ion scan
      EMC,                              ///< Enhanced multiply charged scan
      TDF,                              ///< Time-delayed fragmentation scan
      EMR,                              ///< Electromagnetic radiation scan @n Synonyms: 'EMR spectrum'
      EMISSION,                     ///< Emission scan
      ABSORBTION,               ///< Absorbtion scan
      SIZE_OF_SCANMODE
    };

    /// Names of scan modes
    static const std::string NamesOfScanMode[SIZE_OF_SCANMODE];

    /// Constructor
    InstrumentSettings();
    /// Copy constructor
    InstrumentSettings(const InstrumentSettings & source);
    /// Destructor
    ~InstrumentSettings();

    /// Assignment operator
    InstrumentSettings & operator=(const InstrumentSettings & source);

    /// Equality operator
    bool operator==(const InstrumentSettings & rhs) const;
    /// Equality operator
    bool operator!=(const InstrumentSettings & rhs) const;

    /// returns the scan mode
    ScanMode getScanMode() const;
    /// sets the scan mode
    void setScanMode(ScanMode scan_mode);

    /// return if this scan is a zoom (enhanced resolution) scan
    bool getZoomScan() const;
    /// sets if this scan is a zoom (enhanced resolution) scan
    void setZoomScan(bool zoom_scan);

    /// returns the polarity
    IonSource::Polarity getPolarity() const;
    /// sets the polarity
    void setPolarity(IonSource::Polarity polarity);

    /// returns a const reference to the m/z scan windows
    const std::vector<ScanWindow> & getScanWindows() const;
    /// returns a mutable reference to the m/z scan windows
    std::vector<ScanWindow> & getScanWindows();
    /// sets the m/z scan windows
    void setScanWindows(std::vector<ScanWindow>  scan_windows);

protected:
    ScanMode scan_mode_;
    bool zoom_scan_;
    IonSource::Polarity polarity_;
    std::vector<ScanWindow> scan_windows_;
  };
} // namespace OpenMS

#endif // OPENMS_METADATA_INSTRUMENTSETTINGS_H