/usr/include/OpenMS/FORMAT/OPTIONS/FeatureFileOptions.h is in libopenms-dev 1.11.1-5.
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// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Chris Bielow $
// $Authors: Marc Sturm, Chris Bielow $
// --------------------------------------------------------------------------
#ifndef OPENMS_FORMAT_OPTIONS_FEATUREFILEOPTIONS_H
#define OPENMS_FORMAT_OPTIONS_FEATUREFILEOPTIONS_H
#include <OpenMS/DATASTRUCTURES/DRange.h>
#include <vector>
namespace OpenMS
{
/**
@brief Options for loading files containing features.
*/
class OPENMS_DLLAPI FeatureFileOptions
{
public:
///Default constructor
FeatureFileOptions();
///Destructor
~FeatureFileOptions();
///@name convex hull option
///sets whether or not to load convex hull
void setLoadConvexHull(bool convex);
///returns whether or not to load convex hull
bool getLoadConvexHull() const;
///@name subordinate option
///sets whether or not load subordinates
void setLoadSubordinates(bool sub);
///returns whether or not to load subordinates
bool getLoadSubordinates() const;
///@name metadata option
///sets whether or not to load only meta data
void setMetadataOnly(bool only);
///returns whether or not to load only meta data
bool getMetadataOnly() const;
///@name lazyload option
///sets whether or not to load only feature count
void setSizeOnly(bool only);
///returns whether or not to load only meta data
bool getSizeOnly() const;
///@name RT range option
///restricts the range of RT values for peaks to load
void setRTRange(const DRange<1> & range);
///returns @c true if an RT range has been set
bool hasRTRange() const;
///returns the RT range
const DRange<1> & getRTRange() const;
///@name m/z range option
///restricts the range of MZ values for peaks to load
void setMZRange(const DRange<1> & range);
///returns @c true if an MZ range has been set
bool hasMZRange() const;
///returns the MZ range
const DRange<1> & getMZRange() const;
///@name Intensity range option
///restricts the range of intensity values for peaks to load
void setIntensityRange(const DRange<1> & range);
///returns @c true if an intensity range has been set
bool hasIntensityRange() const;
///returns the intensity range
const DRange<1> & getIntensityRange() const;
private:
bool loadConvexhull_;
bool loadSubordinates_;
bool metadata_only_;
bool has_rt_range_;
bool has_mz_range_;
bool has_intensity_range_;
bool size_only_;
DRange<1> rt_range_;
DRange<1> mz_range_;
DRange<1> intensity_range_;
};
} // namespace OpenMS
#endif // OPENMS_FORMAT_OPTIONS_FEATUREFILEOPTIONS_H
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