/usr/include/OpenMS/FORMAT/HANDLERS/PTMXMLHandler.h is in libopenms-dev 1.11.1-5.
This file is owned by root:root, with mode 0o644.
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// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Andreas Bertsch $
// $Authors: $
// --------------------------------------------------------------------------
#ifndef OPENMS_FORMAT_HANDLERS_PTMXMLHANDLER_H
#define OPENMS_FORMAT_HANDLERS_PTMXMLHANDLER_H
#include <OpenMS/FORMAT/HANDLERS/XMLHandler.h>
#include <vector>
#include <map>
#include <fstream>
namespace OpenMS
{
namespace Internal
{
/**
@brief Handler that is used for parsing PTMXML data
*/
class OPENMS_DLLAPI PTMXMLHandler :
public XMLHandler
{
public:
/// Constructor for loading
PTMXMLHandler(std::map<String, std::pair<String, String> > & ptm_informations, const String & filename);
/// Destructor
virtual ~PTMXMLHandler();
/// Writes the xml file to the ostream 'os'
void writeTo(std::ostream & os);
// Docu in base class
virtual void endElement(const XMLCh * const /*uri*/, const XMLCh * const /*local_name*/, const XMLCh * const qname);
// Docu in base class
virtual void startElement(const XMLCh * const /*uri*/, const XMLCh * const /*local_name*/, const XMLCh * const qname, const xercesc::Attributes & attributes);
// Docu in base class
virtual void characters(const XMLCh * const chars, const XMLSize_t /*length*/);
protected:
std::map<String, std::pair<String, String> > & ptm_informations_;
String name_, tag_, composition_;
bool open_tag_;
};
} // namespace Internal
} // namespace OpenMS
#endif // OPENMS_FORMAT_HANDLERS_PTMXMLHANDLER_H
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