/usr/include/OpenMS/FORMAT/HANDLERS/AcqusHandler.h is in libopenms-dev 1.11.1-5.
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// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Guillaume Belz$
// $Authors: Guillaume Belz$
// --------------------------------------------------------------------------
#ifndef OPENMS_FORMAT_HANDLERS_ACQUSHANDLER_H
#define OPENMS_FORMAT_HANDLERS_ACQUSHANDLER_H
#include <OpenMS/DATASTRUCTURES/String.h>
#include <OpenMS/DATASTRUCTURES/Map.h>
namespace OpenMS
{
namespace Internal
{
/**
@brief Read-only acqus File handler for XMass Analysis.
acqus File contains meta data about calibration (conversion for time to mz ratio),
instrument specification and acquisition method.
@note Do not use this class directly. It is only needed for XMassFile.
*/
class OPENMS_DLLAPI AcqusHandler
{
public:
/**
@brief Contructor with filename.
Open acqus File as stream and import params.
@param filename to acqus File.
@exception Exception::FileNotFound is thrown if the file could not be opened.
@exception Exception::ConversionError is thrown if error conversion from String to calibration param.
*/
AcqusHandler(const String & filename);
/// Destructor
virtual ~AcqusHandler();
/// Conversion from index to MZ ratio using internal calibration params
DoubleReal getPosition(Size index);
/// Read param as string
String getParam(const String & param);
/// Get size of spectrum
Size getSize();
private:
/// Private default constructor
AcqusHandler();
/// Map for params saving
Map<String, String> params_;
/**@name Internal params for calibration */
//@{
DoubleReal dw_;
Size delay_;
DoubleReal ml1_;
DoubleReal ml2_;
DoubleReal ml3_;
Size td_;
//@}
};
} // namespace Internal
} // namespace OpenMS
#endif // OPENMS_FORMAT_HANDLERS_ACQUSHANDLER_H
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