/usr/include/OpenMS/DATASTRUCTURES/CVMappings.h is in libopenms-dev 1.11.1-5.
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// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Andreas Bertsch $
// $Authors: Andreas Bertsch $
// --------------------------------------------------------------------------
#ifndef OPENMS_DATASTRUCTURES_CVMAPPINGS_H
#define OPENMS_DATASTRUCTURES_CVMAPPINGS_H
#include <OpenMS/DATASTRUCTURES/String.h>
#include <OpenMS/DATASTRUCTURES/Map.h>
#include <OpenMS/DATASTRUCTURES/CVMappingRule.h>
#include <OpenMS/DATASTRUCTURES/CVReference.h>
#include <vector>
namespace OpenMS
{
/**
@brief Representation of controlled vocabulary mapping rules (for PSI formats)
This file serves as object for the controlled vocabulary term usage definitions
used in CV-Mapping files. All the supported attributes supported in the
mapping file are supported by this class.
@ingroup Format
*/
class OPENMS_DLLAPI CVMappings
{
public:
/// Default constructor
CVMappings();
/// Copy constructor
CVMappings(const CVMappings & rhs);
/// Destructor
virtual ~CVMappings();
/// Assignment operator
CVMappings & operator=(const CVMappings & rhs);
/** @name Accessors
*/
//@{
/// sets the mapping rules of the mapping file
void setMappingRules(const std::vector<CVMappingRule> & cv_mapping_rules);
/// returns the mapping rules
const std::vector<CVMappingRule> & getMappingRules() const;
/// adds a mapping rule
void addMappingRule(const CVMappingRule & cv_mapping_rule);
/// sets the CV references
void setCVReferences(const std::vector<CVReference> & cv_references);
/// returns the CV references
const std::vector<CVReference> & getCVReferences() const;
/// adds a CV reference
void addCVReference(const CVReference & cv_reference);
//@}
/** @name Predicates
*/
//@{
/// returns true if a CV reference is given
bool hasCVReference(const String & identifier);
/// equality operator
bool operator==(const CVMappings & rhs) const;
/// inequality operator
bool operator!=(const CVMappings & rhs) const;
//@}
protected:
std::vector<CVMappingRule> mapping_rules_;
Map<String, CVReference> cv_references_;
std::vector<CVReference> cv_references_vector_;
};
} // namespace OpenMS
#endif // OPENMS_DATASTRUCTURES_CVMAPPINGS_H
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