/usr/include/OpenMS/CHEMISTRY/EdwardsLippertIteratorTryptic.h is in libopenms-dev 1.11.1-5.
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// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Clemens Groepl,Andreas Bertsch$
// $Authors: $
// --------------------------------------------------------------------------
#ifndef OPENMS_CHEMISTRY_EDWARDSLIPPERTITERATORTRYPTIC_H
#define OPENMS_CHEMISTRY_EDWARDSLIPPERTITERATORTRYPTIC_H
#include <OpenMS/CHEMISTRY/EdwardsLippertIterator.h>
namespace OpenMS
{
/**
@brief EdwardsLippertIterator that only retrieves tryptic seqences
*/
class OPENMS_DLLAPI EdwardsLippertIteratorTryptic :
public EdwardsLippertIterator
{
public:
/// default constructor
EdwardsLippertIteratorTryptic();
/// copy constructor
EdwardsLippertIteratorTryptic(const EdwardsLippertIteratorTryptic & rhs);
/// destructor
virtual ~EdwardsLippertIteratorTryptic();
/// assignment operator
EdwardsLippertIteratorTryptic & operator=(const EdwardsLippertIteratorTryptic & rhs);
/**
@brief indicates if trypsin will cat between the two amino acids
@param aa1 first amino acid
@param aa2 second amino acid
*/
virtual bool isDigestingEnd(char aa1, char aa2);
/**
@brief needed by Factory
@return const string name of class
*/
static const String getProductName()
{
return "EdwardsLippertIteratorTryptic";
}
/**
@brief needed by Factory
@return poiter to new object
*/
static PepIterator * create()
{
return new EdwardsLippertIteratorTryptic;
}
};
}
#endif //OPENMS_CHEMISTRY_EDWARDSLIPPERTITERATORTRYPTIC_H
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