/usr/include/mia-2.2/mia/3d/multireg.hh is in libmia-2.2-dev 2.2.2-1+b1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 | /* -*- mia-c++ -*-
*
* This file is part of MIA - a toolbox for medical image analysis
* Copyright (c) Leipzig, Madrid 1999-2014 Gert Wollny
*
* MIA is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 3 of the License, or
* (at your option) any later version.
*
* This program is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with MIA; if not, see <http://www.gnu.org/licenses/>.
*
*/
#ifndef mia_3d_multireg_hh
#define mia_3d_multireg_hh
#include <mia/3d/model.hh>
#include <mia/3d/timestep.hh>
#include <mia/3d/deformer.hh>
#include <mia/3d/fatcost.hh>
#include <mia/3d/transform.hh>
NS_MIA_BEGIN
/**
@ingroup basic
@brief pointer type for a 3D vector field
*/
typedef std::shared_ptr<C3DFVectorfield > P3DFVectorfield;
/**
@ingroup registration
\brief A 3D non-rigid image registration class.
Initialise it with the desired parameters and call it with the
source (template) and reference image to obtain a vector field
describing the registration.
*/
class EXPORT_3D C3DMultiImageRegister {
public:
/**
The constructor:
\param start_size an approximate size for the lowest resolution in the
multi-resolution registration
\param max_iter maximum number of times steps to be used at each multi-grid level
\param model the registration model (e.g.- navier for linear elasticity operator)
\param time_step the time step model (e.g. fluid to letthe model operator work on the
velocity field instead of the deformation field)
\param outer_epsilon a relative cost function value per multi-grid level to stop
registration
*/
C3DMultiImageRegister(size_t start_size, size_t max_iter,
C3DRegModel& model, C3DRegTimeStep& time_step,
float outer_epsilon);
/**
The registration operator that does the registration
\param cost the cost function to be minimized
\param ipf interpolation factory used for image transformations
\returns a vector field describing the registration
*/
P3DTransformation operator () (C3DImageFatCostList& cost, P3DInterpolatorFactory ipf);
private:
void reg_level(C3DImageFatCostList& cost, C3DGridTransformation& result, const C3DInterpolatorFactory& ipf);
void reg_level_regrid(C3DImageFatCostList& cost, C3DGridTransformation& result, const C3DInterpolatorFactory& ipf);
size_t m_start_size;
size_t m_max_iter;
C3DRegModel& m_model;
C3DRegTimeStep& m_time_step;
float m_outer_epsilon;
};
NS_MIA_END
#endif
|