This file is indexed.

/usr/include/liggghts/tracking_mesh.h is in libliggghts-dev 3.0.3+repack-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
/* ----------------------------------------------------------------------
   LIGGGHTS - LAMMPS Improved for General Granular and Granular Heat
   Transfer Simulations

   LIGGGHTS is part of the CFDEMproject
   www.liggghts.com | www.cfdem.com

   Christoph Kloss, christoph.kloss@cfdem.com
   Copyright 2009-2012 JKU Linz
   Copyright 2012-     DCS Computing GmbH, Linz

   LIGGGHTS is based on LAMMPS
   LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
   http://lammps.sandia.gov, Sandia National Laboratories
   Steve Plimpton, sjplimp@sandia.gov

   This software is distributed under the GNU General Public License.

   See the README file in the top-level directory.
------------------------------------------------------------------------- */

/* ----------------------------------------------------------------------
   Contributing authors:
   Christoph Kloss (JKU Linz, DCS Computing GmbH, Linz)
   Philippe Seil (JKU Linz)
------------------------------------------------------------------------- */

#ifndef LMP_TRACKING_MESH_H
#define LMP_TRACKING_MESH_H

#include "multi_node_mesh_parallel.h"
#include "custom_value_tracker.h"
#include "container.h"
#include "memory.h"

namespace LAMMPS_NS{

  template<int NUM_NODES>
  class TrackingMesh : public MultiNodeMeshParallel<NUM_NODES>
  {
      public:

        void clearReverse();

        void setVerbose();

        virtual void buildNeighbours() = 0;

        virtual void move(double *vecTotal, double *vecIncremental);
        virtual void move(double *vecIncremental);

        virtual void scale(double factor);

        virtual int generateRandomOwnedGhost(double *pos) = 0;
        virtual int generateRandomOwnedGhostWithin(double *pos,double delta) = 0;
        virtual int generateRandomSubbox(double *pos) = 0;

        // inline access

        inline CustomValueTracker& prop()
        {return customValues_;}

        // global to local ID mapping
        inline int map(int global)
        { return (mapArray_ ? mapArray_[global] : -1);}

        inline int tag_max()
        { return mapTagMax_; }

        int id_slow(int i)
        { return id_(i); }

        inline int id(int i)
        { return id_(i); }

        inline int lineNo(int i)
        { return (lineNo_?(*lineNo_)(i):-1); }

        inline bool verbose()
        { return verbose_; }

      protected:

        TrackingMesh(LAMMPS *lmp);
        virtual ~TrackingMesh();

        virtual bool addElement(double **nodeToAdd,int lineNumb);
        virtual void deleteElement(int n);

        void clearGhostForward(bool scale,bool translate,bool rotate);

        // called via mesh move functions
        bool resetToOrig();

        void postInitialSetup();

        virtual void refreshOwned(int setupFlag);
        virtual void refreshGhosts(int setupFlag);

        void clearMap();
        void generateMap();

        virtual void moveElement(int i,double *vecIncremental);

        virtual void rotate(double *totalQ, double *dQ,double *origin);
        virtual void rotate(double *dQ,double *origin);

        // buffer operations

        inline int elemListBufSize(int n,int operation,bool scale,bool translate,bool rotate);
        inline int pushElemListToBuffer(int n, int *list, double *buf, int operation,bool scale,bool translate, bool rotate);
        inline int popElemListFromBuffer(int first, int n, double *buf, int operation,bool scale,bool translate, bool rotate);
        inline int pushElemListToBufferReverse(int first, int n, double *buf, int operation,bool scale,bool translate, bool rotate);
        inline int popElemListFromBufferReverse(int n, int *list, double *buf, int operation,bool scale,bool translate, bool rotate);

        inline int elemBufSize(int operation,bool scale,bool translate,bool rotate);
        inline int pushElemToBuffer(int n, double *buf, int operation,bool scale,bool translate,bool rotate);
        inline int popElemFromBuffer(double *buf, int operation,bool scale,bool translate,bool rotate);

        int meshPropsBufSize(int operation,bool scale,bool translate,bool rotate);
        int pushMeshPropsToBuffer(double *buf, int operation,bool scale,bool translate, bool rotate);
        int popMeshPropsFromBuffer(double *buf, int operation,bool scale,bool translate, bool rotate);

      private:

        // class holding fields
        CustomValueTracker &customValues_;

        // ID of element
        ScalarContainer<int> &id_;

        // line where element was read
        
        ScalarContainer<int> *lineNo_;

        // global-local lookup
        int mapTagMax_;
        int *mapArray_;

        bool verbose_;

  };

  // *************************************
  #include "tracking_mesh_I.h"
  // *************************************

} /* LAMMPS_NS */
#endif /* TRACKINGMESH_H_ */