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Evocosm - A C++ Framework for Evolutionary Computing
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Created by <a href="mailto:scott.ladd@@coyotegulch.com?subject=libevocosm">Scott Robert Ladd</a> at
<a href="http://www.coyotegulch.com">Coyote Gulch Productions</a>.
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<a href="#pub-methods">Public Member Functions</a> |
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<div class="title">libevocosm::evocosm< OrganismType > Class Template Reference</div> </div>
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<p>Associates organisms with the components of an evolutionary system.
<a href="a00004.html#details">More...</a></p>
<p><code>#include <<a class="el" href="a00043_source.html">evocosm.h</a>></code></p>
<div class="dynheader">
Inheritance diagram for libevocosm::evocosm< OrganismType >:</div>
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<div class="center">
<img src="a00004.png" usemap="#libevocosm::evocosm< OrganismType >_map" alt=""/>
<map id="libevocosm::evocosm< OrganismType >_map" name="libevocosm::evocosm< OrganismType >_map">
<area href="a00017.html" title="Elements shared by all classes in Evocosm." alt="libevocosm::globals" shape="rect" coords="0,0,237,24"/>
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<p><a href="a00065.html">List of all members.</a></p>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a1bd83303fa601e873b58829b66e360ef"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="a00004.html#a1bd83303fa601e873b58829b66e360ef">evocosm</a> (vector< OrganismType > &a_population, <a class="el" href="a00018.html">landscape</a>< OrganismType > &a_landscape, <a class="el" href="a00023.html">mutator</a>< OrganismType > &a_mutator, <a class="el" href="a00030.html">reproducer</a>< OrganismType > &a_reproducer, <a class="el" href="a00032.html">scaler</a>< OrganismType > &a_scaler, <a class="el" href="a00033.html">selector</a>< OrganismType > &a_selector, <a class="el" href="a00002.html">analyzer</a>< OrganismType > &a_analyzer, <a class="el" href="a00020.html">listener</a>< OrganismType > &a_listener)</td></tr>
<tr class="memdesc:a1bd83303fa601e873b58829b66e360ef"><td class="mdescLeft"> </td><td class="mdescRight">Creation constructor. <a href="#a1bd83303fa601e873b58829b66e360ef"></a><br/></td></tr>
<tr class="memitem:a10b46e3828c096a14f95a12c175e2629"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="a00004.html#a10b46e3828c096a14f95a12c175e2629">evocosm</a> (const <a class="el" href="a00004.html">evocosm</a>< OrganismType > &a_source)</td></tr>
<tr class="memdesc:a10b46e3828c096a14f95a12c175e2629"><td class="mdescLeft"> </td><td class="mdescRight">Copy constructor. <a href="#a10b46e3828c096a14f95a12c175e2629"></a><br/></td></tr>
<tr class="memitem:a258f4e9afaaa6388135675d42f77fefb"><td class="memItemLeft" align="right" valign="top">virtual </td><td class="memItemRight" valign="bottom"><a class="el" href="a00004.html#a258f4e9afaaa6388135675d42f77fefb">~evocosm</a> ()</td></tr>
<tr class="memdesc:a258f4e9afaaa6388135675d42f77fefb"><td class="mdescLeft"> </td><td class="mdescRight">Virtual destructor. <a href="#a258f4e9afaaa6388135675d42f77fefb"></a><br/></td></tr>
<tr class="memitem:a2f10241e60976eea622f7da30daacd21"><td class="memItemLeft" align="right" valign="top"><a class="el" href="a00004.html">evocosm</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="a00004.html#a2f10241e60976eea622f7da30daacd21">operator=</a> (const <a class="el" href="a00004.html">evocosm</a>< OrganismType > &a_source)</td></tr>
<tr class="memdesc:a2f10241e60976eea622f7da30daacd21"><td class="mdescLeft"> </td><td class="mdescRight">Assignment operator. <a href="#a2f10241e60976eea622f7da30daacd21"></a><br/></td></tr>
<tr class="memitem:ad640719e897358c86962d2ae6935327f"><td class="memItemLeft" align="right" valign="top">virtual bool </td><td class="memItemRight" valign="bottom"><a class="el" href="a00004.html#ad640719e897358c86962d2ae6935327f">run_generation</a> ()</td></tr>
<tr class="memdesc:ad640719e897358c86962d2ae6935327f"><td class="mdescLeft"> </td><td class="mdescRight">Compute next generation. <a href="#ad640719e897358c86962d2ae6935327f"></a><br/></td></tr>
<tr class="memitem:a03b57fe5caf417d5b50f5e9e74ee87e0"><td class="memItemLeft" align="right" valign="top">vector< OrganismType > & </td><td class="memItemRight" valign="bottom"><a class="el" href="a00004.html#a03b57fe5caf417d5b50f5e9e74ee87e0">get_population</a> ()</td></tr>
<tr class="memdesc:a03b57fe5caf417d5b50f5e9e74ee87e0"><td class="mdescLeft"> </td><td class="mdescRight">Directly view population. <a href="#a03b57fe5caf417d5b50f5e9e74ee87e0"></a><br/></td></tr>
<tr class="memitem:a36418b49ee543e1aa2f675f4ac82b148"><td class="memItemLeft" align="right" valign="top">unsigned int </td><td class="memItemRight" valign="bottom"><a class="el" href="a00004.html#a36418b49ee543e1aa2f675f4ac82b148">get_sleep_time</a> ()</td></tr>
<tr class="memdesc:a36418b49ee543e1aa2f675f4ac82b148"><td class="mdescLeft"> </td><td class="mdescRight">Get the sleep time property value. <a href="#a36418b49ee543e1aa2f675f4ac82b148"></a><br/></td></tr>
<tr class="memitem:a17db3f47629f5a0ad8df461ba6f7df8e"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="a00004.html#a17db3f47629f5a0ad8df461ba6f7df8e">set_sleep_time</a> (unsigned int a_sleep_time)</td></tr>
<tr class="memdesc:a17db3f47629f5a0ad8df461ba6f7df8e"><td class="mdescLeft"> </td><td class="mdescRight">Set the sleep time property value. <a href="#a17db3f47629f5a0ad8df461ba6f7df8e"></a><br/></td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2><a name="pro-methods"></a>
Protected Member Functions</h2></td></tr>
<tr class="memitem:a9f642f9034b52fb5221a413e9a6a5dad"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="a00004.html#a9f642f9034b52fb5221a413e9a6a5dad">yield</a> ()</td></tr>
<tr class="memdesc:a9f642f9034b52fb5221a413e9a6a5dad"><td class="mdescLeft"> </td><td class="mdescRight">Yield. <a href="#a9f642f9034b52fb5221a413e9a6a5dad"></a><br/></td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2><a name="pro-attribs"></a>
Protected Attributes</h2></td></tr>
<tr class="memitem:ac1adf0f48b9ddd41ea6bf2c249e55219"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="ac1adf0f48b9ddd41ea6bf2c249e55219"></a>
vector< OrganismType > & </td><td class="memItemRight" valign="bottom"><a class="el" href="a00004.html#ac1adf0f48b9ddd41ea6bf2c249e55219">m_population</a></td></tr>
<tr class="memdesc:ac1adf0f48b9ddd41ea6bf2c249e55219"><td class="mdescLeft"> </td><td class="mdescRight">The populations of organisms. <br/></td></tr>
<tr class="memitem:ae41763e7b918ff31e10f44cad6f5e34f"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="ae41763e7b918ff31e10f44cad6f5e34f"></a>
<a class="el" href="a00018.html">landscape</a>< OrganismType > & </td><td class="memItemRight" valign="bottom"><a class="el" href="a00004.html#ae41763e7b918ff31e10f44cad6f5e34f">m_landscape</a></td></tr>
<tr class="memdesc:ae41763e7b918ff31e10f44cad6f5e34f"><td class="mdescLeft"> </td><td class="mdescRight">Fitness landscapes common to all populations. <br/></td></tr>
<tr class="memitem:a7f35b0a090f1f2d70d8de495add58c3c"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a7f35b0a090f1f2d70d8de495add58c3c"></a>
<a class="el" href="a00023.html">mutator</a>< OrganismType > & </td><td class="memItemRight" valign="bottom"><a class="el" href="a00004.html#a7f35b0a090f1f2d70d8de495add58c3c">m_mutator</a></td></tr>
<tr class="memdesc:a7f35b0a090f1f2d70d8de495add58c3c"><td class="mdescLeft"> </td><td class="mdescRight">A mutator to randomly influence genes. <br/></td></tr>
<tr class="memitem:a520a3321dee68a0afcd8357fb678c49c"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a520a3321dee68a0afcd8357fb678c49c"></a>
<a class="el" href="a00030.html">reproducer</a>< OrganismType > & </td><td class="memItemRight" valign="bottom"><a class="el" href="a00004.html#a520a3321dee68a0afcd8357fb678c49c">m_reproducer</a></td></tr>
<tr class="memdesc:a520a3321dee68a0afcd8357fb678c49c"><td class="mdescLeft"> </td><td class="mdescRight">Creates new organisms. <br/></td></tr>
<tr class="memitem:a8539bb8a29d88ebb639dbee0179bce31"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a8539bb8a29d88ebb639dbee0179bce31"></a>
<a class="el" href="a00032.html">scaler</a>< OrganismType > & </td><td class="memItemRight" valign="bottom"><a class="el" href="a00004.html#a8539bb8a29d88ebb639dbee0179bce31">m_scaler</a></td></tr>
<tr class="memdesc:a8539bb8a29d88ebb639dbee0179bce31"><td class="mdescLeft"> </td><td class="mdescRight">Scales the fitness of the evocosm. <br/></td></tr>
<tr class="memitem:a4e489f1e9a219192727f526bf9f6face"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a4e489f1e9a219192727f526bf9f6face"></a>
<a class="el" href="a00033.html">selector</a>< OrganismType > & </td><td class="memItemRight" valign="bottom"><a class="el" href="a00004.html#a4e489f1e9a219192727f526bf9f6face">m_selector</a></td></tr>
<tr class="memdesc:a4e489f1e9a219192727f526bf9f6face"><td class="mdescLeft"> </td><td class="mdescRight">Selects organisms that survive from one generation to the next. <br/></td></tr>
<tr class="memitem:a14d2ca3abc86bccc1ad8b46ba4fa3b6e"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a14d2ca3abc86bccc1ad8b46ba4fa3b6e"></a>
<a class="el" href="a00002.html">analyzer</a>< OrganismType > & </td><td class="memItemRight" valign="bottom"><a class="el" href="a00004.html#a14d2ca3abc86bccc1ad8b46ba4fa3b6e">m_analyzer</a></td></tr>
<tr class="memdesc:a14d2ca3abc86bccc1ad8b46ba4fa3b6e"><td class="mdescLeft"> </td><td class="mdescRight">Reports the a evocosm for analysis or display. <br/></td></tr>
<tr class="memitem:a8cc42d262316efc866851cd48af3c2d9"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a8cc42d262316efc866851cd48af3c2d9"></a>
<a class="el" href="a00020.html">listener</a>< OrganismType > & </td><td class="memItemRight" valign="bottom"><a class="el" href="a00004.html#a8cc42d262316efc866851cd48af3c2d9">m_listener</a></td></tr>
<tr class="memdesc:a8cc42d262316efc866851cd48af3c2d9"><td class="mdescLeft"> </td><td class="mdescRight">A listener for evocosm progress. <br/></td></tr>
<tr class="memitem:a2171701bfc2d7c411984b7ac81acbbe3"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a2171701bfc2d7c411984b7ac81acbbe3"></a>
size_t </td><td class="memItemRight" valign="bottom"><a class="el" href="a00004.html#a2171701bfc2d7c411984b7ac81acbbe3">m_iteration</a></td></tr>
<tr class="memdesc:a2171701bfc2d7c411984b7ac81acbbe3"><td class="mdescLeft"> </td><td class="mdescRight">Count of iterations made. <br/></td></tr>
<tr class="memitem:ac724f1c080779591548727be314a80b2"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="ac724f1c080779591548727be314a80b2"></a>
unsigned int </td><td class="memItemRight" valign="bottom"><a class="el" href="a00004.html#ac724f1c080779591548727be314a80b2">m_sleep_time</a></td></tr>
<tr class="memdesc:ac724f1c080779591548727be314a80b2"><td class="mdescLeft"> </td><td class="mdescRight">Number microseconds for process to sleep on yield. <br/></td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2><a name="inherited"></a>
Additional Inherited Members</h2></td></tr>
<tr class="inherit_header pub_static_methods_a00017"><td colspan="2" onclick="javascript:toggleInherit('pub_static_methods_a00017')"><img src="closed.png" alt="-"/> Static Protected Member Functions inherited from <a class="el" href="a00017.html">libevocosm::globals</a></td></tr>
<tr class="memitem:ae0fb3d77391329662f21d0f84e222602 inherit pub_static_methods_a00017"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="ae0fb3d77391329662f21d0f84e222602"></a>
static void </td><td class="memItemRight" valign="bottom"><a class="el" href="a00017.html#ae0fb3d77391329662f21d0f84e222602">set_seed</a> (uint32_t a_seed)</td></tr>
<tr class="memdesc:ae0fb3d77391329662f21d0f84e222602 inherit pub_static_methods_a00017"><td class="mdescLeft"> </td><td class="mdescRight">Set the seed for the random number generator. <br/></td></tr>
<tr class="memitem:a76f6dc798b18bd272e1ff3c1f8d9c4fd inherit pub_static_methods_a00017"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a76f6dc798b18bd272e1ff3c1f8d9c4fd"></a>
static uint32_t </td><td class="memItemRight" valign="bottom"><a class="el" href="a00017.html#a76f6dc798b18bd272e1ff3c1f8d9c4fd">get_seed</a> ()</td></tr>
<tr class="memdesc:a76f6dc798b18bd272e1ff3c1f8d9c4fd inherit pub_static_methods_a00017"><td class="mdescLeft"> </td><td class="mdescRight">Set the seed for the random number generator. <br/></td></tr>
<tr class="memitem:acb9a2cde1cdf3f6c0dde4c4e11b74533 inherit pub_static_methods_a00017"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="acb9a2cde1cdf3f6c0dde4c4e11b74533"></a>
static std::string </td><td class="memItemRight" valign="bottom"><a class="el" href="a00017.html#acb9a2cde1cdf3f6c0dde4c4e11b74533">version</a> ()</td></tr>
<tr class="memdesc:acb9a2cde1cdf3f6c0dde4c4e11b74533 inherit pub_static_methods_a00017"><td class="mdescLeft"> </td><td class="mdescRight">Get version number. <br/></td></tr>
<tr class="memitem:a5e8897de95e0cccd71f0493586b48424 inherit pro_static_methods_a00017"><td class="memItemLeft" align="right" valign="top"><a class="anchor" id="a5e8897de95e0cccd71f0493586b48424"></a>
static size_t </td><td class="memItemRight" valign="bottom"><a class="el" href="a00017.html#a5e8897de95e0cccd71f0493586b48424">rand_index</a> (size_t n)</td></tr>
<tr class="memdesc:a5e8897de95e0cccd71f0493586b48424 inherit pro_static_methods_a00017"><td class="mdescLeft"> </td><td class="mdescRight">Static function to allow use of g_random function pointer in random_shuffle. <br/></td></tr>
</table>
<hr/><a name="details" id="details"></a><h2>Detailed Description</h2>
<div class="textblock"><h3>template<class OrganismType><br/>
class libevocosm::evocosm< OrganismType ></h3>
<p>This is where it all comes together: An evocosm binds a evocosm of organisms to a set of objects that define how those organisms evolve. </p>
<dl class="params"><dt>Parameters:</dt><dd>
<table class="params">
<tr><td class="paramname">OrganismType</td><td>- The type of organism </td></tr>
</table>
</dd>
</dl>
</div><hr/><h2>Constructor & Destructor Documentation</h2>
<a class="anchor" id="a1bd83303fa601e873b58829b66e360ef"></a>
<div class="memitem">
<div class="memproto">
<div class="memtemplate">
template<class OrganismType> </div>
<table class="memname">
<tr>
<td class="memname"><a class="el" href="a00004.html">libevocosm::evocosm</a>< OrganismType >::<a class="el" href="a00004.html">evocosm</a> </td>
<td>(</td>
<td class="paramtype">vector< OrganismType > & </td>
<td class="paramname"><em>a_population</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype"><a class="el" href="a00018.html">landscape</a>< OrganismType > & </td>
<td class="paramname"><em>a_landscape</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype"><a class="el" href="a00023.html">mutator</a>< OrganismType > & </td>
<td class="paramname"><em>a_mutator</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype"><a class="el" href="a00030.html">reproducer</a>< OrganismType > & </td>
<td class="paramname"><em>a_reproducer</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype"><a class="el" href="a00032.html">scaler</a>< OrganismType > & </td>
<td class="paramname"><em>a_scaler</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype"><a class="el" href="a00033.html">selector</a>< OrganismType > & </td>
<td class="paramname"><em>a_selector</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype"><a class="el" href="a00002.html">analyzer</a>< OrganismType > & </td>
<td class="paramname"><em>a_analyzer</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype"><a class="el" href="a00020.html">listener</a>< OrganismType > & </td>
<td class="paramname"><em>a_listener</em> </td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
</tr>
</table>
</div><div class="memdoc">
<p>Creates a new evocosm. Think of an evocosm as a director, a tool for associating organisms with their landscape. Note that these arguments are modifiable references, and that the referenced objects must continue to exist during the lifetime of the evocosm. </p>
<dl class="params"><dt>Parameters:</dt><dd>
<table class="params">
<tr><td class="paramname">a_population</td><td>Initial population of organisms </td></tr>
<tr><td class="paramname">a_landscape</td><td>Initial set of landscaoes for testing organism fitness </td></tr>
<tr><td class="paramname">a_mutator</td><td>- A concrete implementation of mutator </td></tr>
<tr><td class="paramname">a_reproducer</td><td>- A concrete implementation of reproducer </td></tr>
<tr><td class="paramname">a_scaler</td><td>- A concrete implementation of scaler </td></tr>
<tr><td class="paramname">a_selector</td><td>- A concrete implementation of selector </td></tr>
<tr><td class="paramname">a_analyzer</td><td>- A concrete implementation of analyzer </td></tr>
<tr><td class="paramname">a_listener</td><td>- a listener for events </td></tr>
</table>
</dd>
</dl>
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<td class="memname"><a class="el" href="a00004.html">libevocosm::evocosm</a>< OrganismType >::<a class="el" href="a00004.html">evocosm</a> </td>
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<p>Creates a new evocosm identical to an existing one. </p>
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<td class="memname"><a class="el" href="a00004.html">libevocosm::evocosm</a>< OrganismType >::~<a class="el" href="a00004.html">evocosm</a> </td>
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<p>A virtual destructor. By default, it does nothing; this is a placeholder that identifies this class as a potential base, ensuring that objects of a derived class will have their destructors called if they are destroyed through a base-class pointer. </p>
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<hr/><h2>Member Function Documentation</h2>
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<td class="memname">vector<OrganismType>& <a class="el" href="a00004.html">libevocosm::evocosm</a>< OrganismType >::get_population </td>
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<p><b>Use with caution!</b> This function provides direct read-write access to an evocosm's population. This is necessary when the organisms need special manipulation, such as when they can not be randomized by a default constructor. </p>
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<p>Get the sleep time setting for this listerner. /return current value of sleep time (microseconds) </p>
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<td class="memname"><a class="el" href="a00004.html">evocosm</a>< OrganismType > & <a class="el" href="a00004.html">libevocosm::evocosm</a>< OrganismType >::operator= </td>
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<p>Assigns an existing object the state of another. </p>
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<tr><td class="paramname">a_source</td><td>- The source object </td></tr>
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<dl class="section return"><dt>Returns:</dt><dd>Reference to target object </dd></dl>
<p>References <a class="el" href="a00004.html#a14d2ca3abc86bccc1ad8b46ba4fa3b6e">libevocosm::evocosm< OrganismType >::m_analyzer</a>, <a class="el" href="a00004.html#a2171701bfc2d7c411984b7ac81acbbe3">libevocosm::evocosm< OrganismType >::m_iteration</a>, <a class="el" href="a00004.html#ae41763e7b918ff31e10f44cad6f5e34f">libevocosm::evocosm< OrganismType >::m_landscape</a>, <a class="el" href="a00004.html#ac1adf0f48b9ddd41ea6bf2c249e55219">libevocosm::evocosm< OrganismType >::m_population</a>, <a class="el" href="a00004.html#a8539bb8a29d88ebb639dbee0179bce31">libevocosm::evocosm< OrganismType >::m_scaler</a>, and <a class="el" href="a00004.html#ac724f1c080779591548727be314a80b2">libevocosm::evocosm< OrganismType >::m_sleep_time</a>.</p>
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<td class="memname">bool <a class="el" href="a00004.html">libevocosm::evocosm</a>< OrganismType >::run_generation </td>
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<p>A generation represents a cycle in the life of an evocosm; this function performs one sequence of fitness testing & scaling, reporting, breeding, and mutation. This method can be replaced by in a derived class to define a different processing sequence; the default sequence defined here is good for most evolutionary algorithms I've created. </p>
<dl class="section return"><dt>Returns:</dt><dd>Returns <em>true</em> when the generation has reached a specific goal. </dd></dl>
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<td class="memname">void <a class="el" href="a00004.html">libevocosm::evocosm</a>< OrganismType >::set_sleep_time </td>
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<p>Set the sleep time property value. /param a_sleep_time new value of sleep time (microseconds) </p>
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<td class="memname">void <a class="el" href="a00004.html">libevocosm::evocosm</a>< OrganismType >::yield </td>
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<p>Evocosm periodically invokes this function to allow other processes to run. In most cases, this will be some sort of platform-specific sleep function, such as usleep. </p>
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<hr/>The documentation for this class was generated from the following file:<ul>
<li><a class="el" href="a00043_source.html">evocosm.h</a></li>
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