/usr/include/dune/pdelab/stationary/linearproblem.hh is in libdune-pdelab-dev 2.0.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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#define DUNE_PDELAB_STATIONARYLINEARPROBLEM_HH
#include <iostream>
#include <dune/common/timer.hh>
#include <dune/common/deprecated.hh>
#include <dune/common/parametertree.hh>
#include <dune/pdelab/backend/backendselector.hh>
#include <dune/pdelab/constraints/common/constraints.hh>
#include <dune/pdelab/backend/solver.hh>
namespace Dune {
namespace PDELab {
//===============================================================
// A class for solving linear stationary problems.
// It assembles the matrix, computes the right hand side and
// solves the problem.
// This is only a first vanilla implementation which has to be improved.
//===============================================================
// Status information of linear problem solver
template<class RFType>
struct StationaryLinearProblemSolverResult : LinearSolverResult<RFType>
{
RFType first_defect; // the first defect
RFType defect; // the final defect
double assembler_time; // Cumulative time for matrix assembly
double linear_solver_time; // Cumulative time for linear sovler
int linear_solver_iterations; // Total number of linear iterations
StationaryLinearProblemSolverResult()
: first_defect(0.0)
, defect(0.0)
, assembler_time(0.0)
, linear_solver_time(0.0)
, linear_solver_iterations(0)
{}
};
template<typename GO, typename LS, typename V>
class StationaryLinearProblemSolver
{
typedef typename V::ElementType Real;
typedef typename GO::Traits::Jacobian M;
typedef typename GO::Traits::TrialGridFunctionSpace TrialGridFunctionSpace;
typedef typename Dune::PDELab::BackendVectorSelector<TrialGridFunctionSpace,Real>::Type W;
typedef GO GridOperator;
public:
typedef StationaryLinearProblemSolverResult<double> Result;
StationaryLinearProblemSolver(const GO& go, V& x, LS& ls, typename V::ElementType reduction, typename V::ElementType min_defect = 1e-99, int verbose=1) DUNE_DEPRECATED_MSG("Use StationaryLinearProblemSolver(const GO&, LS&, V&, ...) instead.")
: _go(go)
, _ls(ls)
, _x(&x)
, _reduction(reduction)
, _min_defect(min_defect)
, _hanging_node_modifications(false)
, _keep_matrix(true)
, _verbose(verbose)
{}
StationaryLinearProblemSolver(const GO& go, LS& ls, V& x, typename V::ElementType reduction, typename V::ElementType min_defect = 1e-99, int verbose=1)
: _go(go)
, _ls(ls)
, _x(&x)
, _reduction(reduction)
, _min_defect(min_defect)
, _hanging_node_modifications(false)
, _keep_matrix(true)
, _verbose(verbose)
{}
StationaryLinearProblemSolver (const GO& go, LS& ls, typename V::ElementType reduction, typename V::ElementType min_defect = 1e-99, int verbose=1)
: _go(go)
, _ls(ls)
, _x()
, _reduction(reduction)
, _min_defect(min_defect)
, _hanging_node_modifications(false)
, _keep_matrix(true)
, _verbose(verbose)
{}
//! Construct a StationaryLinearProblemSolver for the given objects and read parameters from a ParameterTree.
/**
* This constructor reads the parameter controlling its operation from a passed-in ParameterTree
* instead of requiring the user to specify all of them as individual constructor parameters.
* Currently the following parameters are read:
*
* Name | Default Value | Explanation
* -------------------------- | ------------- | -----------
* reduction | | Required relative defect reduction
* min_defect | 1e-99 | minimum absolute defect at which to stop
* hanging_node_modifications | false | perform required transformations for hanging nodes
* keep_matrix | true | keep matrix between calls to apply() (but reassemble values every time)
* verbosity | 1 | control amount of debug output
*
* Apart from reduction, all parameters have a default value and are optional.
* The actual reduction for a call to apply() is calculated as r = max(reduction,min_defect/start_defect),
* where start defect is the norm of the residual of x.
*/
StationaryLinearProblemSolver(const GO& go, LS& ls, V& x, const ParameterTree& params)
: _go(go)
, _ls(ls)
, _x(&x)
, _reduction(params.get<typename V::ElementType>("reduction"))
, _min_defect(params.get<typename V::ElementType>("min_defect",1e-99))
, _hanging_node_modifications(params.get<bool>("hanging_node_modifications",false))
, _keep_matrix(params.get<bool>("keep_matrix",true))
, _verbose(params.get<int>("verbosity",1))
{}
//! Construct a StationaryLinearProblemSolver for the given objects and read parameters from a ParameterTree.
/**
* This constructor reads the parameter controlling its operation from a passed-in ParameterTree
* instead of requiring the user to specify all of them as individual constructor parameters.
* Currently the following parameters are read:
*
* Name | Default Value | Explanation
* -------------------------- | ------------- | -----------
* reduction | | Required relative defect reduction
* min_defect | 1e-99 | minimum absolute defect at which to stop
* hanging_node_modifications | false | perform required transformations for hanging nodes
* keep_matrix | true | keep matrix between calls to apply() (but reassemble values every time)
* verbosity | 1 | control amount of debug output
*
* Apart from reduction, all parameters have a default value and are optional.
* The actual reduction for a call to apply() is calculated as r = max(reduction,min_defect/start_defect),
* where start defect is the norm of the residual of x.
*/
StationaryLinearProblemSolver(const GO& go, LS& ls, const ParameterTree& params)
: _go(go)
, _ls(ls)
, _x()
, _reduction(params.get<typename V::ElementType>("reduction"))
, _min_defect(params.get<typename V::ElementType>("min_defect",1e-99))
, _hanging_node_modifications(params.get<bool>("hanging_node_modifications",false))
, _keep_matrix(params.get<bool>("keep_matrix",true))
, _verbose(params.get<int>("verbosity",1))
{}
//! Set whether the solver should apply the necessary transformations for calculations on hanging nodes.
void setHangingNodeModifications(bool b)
{
_hanging_node_modifications=b;
}
//! Return whether the solver performs the necessary transformations for calculations on hanging nodes.
bool hangingNodeModifications() const
{
return _hanging_node_modifications;
}
//! Set whether the jacobian matrix should be kept across calls to apply().
void setKeepMatrix(bool b)
{
_keep_matrix = b;
}
//! Return whether the jacobian matrix is kept across calls to apply().
bool keepMatrix() const
{
return _keep_matrix;
}
const Result& result() const
{
return _res;
}
void apply(V& x) {
_x = &x;
apply();
}
void apply ()
{
Dune::Timer watch;
double timing,assembler_time=0;
// assemble matrix; optional: assemble only on demand!
watch.reset();
if (!_jacobian)
{
_jacobian = make_shared<M>(_go);
timing = watch.elapsed();
if (_go.trialGridFunctionSpace().gridView().comm().rank()==0 && _verbose>=1)
std::cout << "=== matrix setup (max) " << timing << " s" << std::endl;
watch.reset();
assembler_time += timing;
}
else if (_go.trialGridFunctionSpace().gridView().comm().rank()==0 && _verbose>=1)
std::cout << "=== matrix setup skipped (matrix already allocated)" << std::endl;
(*_jacobian) = Real(0.0);
if (_hanging_node_modifications)
{
Dune::PDELab::set_shifted_dofs(_go.localAssembler().trialConstraints(),0.0,*_x); // set hanging node DOFs to zero
_go.localAssembler().backtransform(*_x); // interpolate hanging nodes adjacent to Dirichlet nodes
}
_go.jacobian(*_x,*_jacobian);
timing = watch.elapsed();
// timing = gos.trialGridFunctionSpace().gridView().comm().max(timing);
if (_go.trialGridFunctionSpace().gridView().comm().rank()==0 && _verbose>=1)
std::cout << "=== matrix assembly (max) " << timing << " s" << std::endl;
assembler_time += timing;
// assemble residual
watch.reset();
W r(_go.testGridFunctionSpace(),0.0);
_go.residual(*_x,r); // residual is additive
timing = watch.elapsed();
// timing = gos.trialGridFunctionSpace().gridView().comm().max(timing);
if (_go.trialGridFunctionSpace().gridView().comm().rank()==0 && _verbose>=1)
std::cout << "=== residual assembly (max) " << timing << " s" << std::endl;
assembler_time += timing;
_res.assembler_time = assembler_time;
typename V::ElementType defect = _ls.norm(r);
// compute correction
watch.reset();
V z(_go.trialGridFunctionSpace(),0.0);
typename V::ElementType red = std::max(_reduction,_min_defect/defect);
if (_go.trialGridFunctionSpace().gridView().comm().rank()==0)
std::cout << "=== solving (reduction: " << red << ") ";
_ls.apply(*_jacobian,z,r,red); // solver makes right hand side consistent
_linear_solver_result = _ls.result();
timing = watch.elapsed();
// timing = gos.trialGridFunctionSpace().gridView().comm().max(timing);
if (_go.trialGridFunctionSpace().gridView().comm().rank()==0 && _verbose>=1)
std::cout << timing << " s" << std::endl;
_res.linear_solver_time = timing;
_res.converged = _linear_solver_result.converged;
_res.iterations = _linear_solver_result.iterations;
_res.elapsed = _linear_solver_result.elapsed;
_res.reduction = _linear_solver_result.reduction;
_res.conv_rate = _linear_solver_result.conv_rate;
_res.first_defect = static_cast<double>(defect);
_res.defect = static_cast<double>(defect)*_linear_solver_result.reduction;
_res.linear_solver_iterations = _linear_solver_result.iterations;
// and update
if (_hanging_node_modifications)
Dune::PDELab::set_shifted_dofs(_go.localAssembler().trialConstraints(),0.0,*_x); // set hanging node DOFs to zero
*_x -= z;
if (_hanging_node_modifications)
_go.localAssembler().backtransform(*_x); // interpolate hanging nodes adjacent to Dirichlet nodes
if (!_keep_matrix)
_jacobian.reset();
}
//! Discard the stored Jacobian matrix.
void discardMatrix()
{
if(_jacobian)
_jacobian.reset();
}
const Dune::PDELab::LinearSolverResult<double>& ls_result() const{
return _linear_solver_result;
}
private:
const GO& _go;
LS& _ls;
V* _x;
shared_ptr<M> _jacobian;
typename V::ElementType _reduction;
typename V::ElementType _min_defect;
Dune::PDELab::LinearSolverResult<double> _linear_solver_result;
Result _res;
bool _hanging_node_modifications;
bool _keep_matrix;
int _verbose;
};
} // namespace PDELab
} // namespace Dune
#endif
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