This file is indexed.

/usr/include/dune/grid/alugrid/2d/entity.hh is in libdune-grid-dev 2.3.1-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
// -*- tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 2 -*-
// vi: set et ts=4 sw=2 sts=2:
#ifndef DUNE_ALU2DGRIDENTITY_HH
#define DUNE_ALU2DGRIDENTITY_HH

// System includes

// Dune includes
#include <dune/grid/common/entity.hh>
//#include <dune/grid/common/intersectioniteratorwrapper.hh>

// Local includes
#include <dune/grid/alugrid/2d/intersection.hh>
#include <dune/grid/alugrid/2d/iterator.hh>
#include <dune/grid/alugrid/2d/entityseed.hh>

namespace Dune {
  // Forward declarations
  template<int cd, int dim, class GridImp>
  class ALU2dGridEntity;
  template<int cd, PartitionIteratorType pitype, class GridImp >
  class ALU2dGridLevelIterator;
  template< int codim, class GridImp >
  class ALU2dGridEntityPointer;
  template<int mydim, int coorddim, class GridImp>
  class ALU2dGridGeometry;
  template<class GridImp>
  class ALU2dGridHierarchicIterator;
  template<class GridImp>
  class ALU2dGridLevelIntersectionIterator;
  template<class GridImp>
  class ALU2dGridLeafIntersectionIterator;
  template<class GridImp>
  class ALU2dGridIntersectionIterator;
  template<int codim, PartitionIteratorType, class GridImp>
  class ALU2dGridLeafIterator;
  template< int dim, int dimworld, ALU2DSPACE ElementType eltype >
  class ALU2dGrid;

  //**********************************************************************
  //
  // --ALU2dGridEntity
  // --Entity
  //
  //**********************************************************************
  /*!
     A Grid is a container of grid entities. An entity is parametrized by the codimension.
     An entity of codimension c in dimension d is a d-c dimensional object.

     Here: the general template
   */
  template<int cd, int dim, class GridImp>
  class ALU2dGridEntity :
    public EntityDefaultImplementation <cd,dim,GridImp,ALU2dGridEntity>
  {
    static const int dimworld = GridImp::dimensionworld;
    static const ALU2DSPACE ElementType eltype = GridImp::elementType;

    friend class ALU2dGrid< dim, dimworld, eltype >;
    friend class ALU2dGridIntersectionIterator < GridImp >;
    friend class ALU2dGridIntersectionIterator < const GridImp >;
    friend class ALU2dGridLevelIntersectionIterator < GridImp >;
    friend class ALU2dGridLevelIntersectionIterator < const GridImp >;
    friend class ALU2dGridLeafIntersectionIterator < GridImp >;
    friend class ALU2dGridLeafIntersectionIterator < const GridImp >;
    friend class ALU2dGridHierarchicIterator   < const GridImp >;
    friend class ALU2dGridHierarchicIterator   < GridImp >;
    friend class ALU2dGridLevelIterator <0,All_Partition,GridImp>;
    friend class ALU2dGridLevelIterator <1,All_Partition,GridImp>;
    friend class ALU2dGridLevelIterator <2,All_Partition,GridImp>;
    friend class ALU2dGridLeafIterator <0, All_Partition,GridImp>;
    friend class ALU2dGridLeafIterator <1, All_Partition,GridImp>;
    friend class ALU2dGridLeafIterator <2, All_Partition,GridImp>;
    friend class ALU2dGridMakeableEntity<0,dim,GridImp>;

    friend class ALU2dGridHierarchicIndexSet<dim,dimworld,eltype>;

    typedef typename ALU2dImplTraits< dimworld, eltype >::HElementType HElementType ;

    typedef typename GridImp::Traits::template Codim< cd >::GeometryImpl GeometryImpl;

  public:
    typedef typename GridImp :: GridObjectFactoryType FactoryType;

    typedef typename Dune::ALU2dImplTraits< dimworld, eltype >::template Codim<cd>::InterfaceType ElementType;
    typedef typename Dune::ALU2dImplTraits< dimworld, eltype >::template Codim<2>::InterfaceType VertexType;

    //! type of our interface entity
    typedef typename GridImp::template Codim<cd>::Entity Entity;
    //! type of corresponding interface geometry
    typedef typename GridImp::template Codim<cd>::Geometry Geometry;

    //! typedef of my type
    typedef typename GridImp::template Codim<cd>::EntitySeed EntitySeed;

    //! tpye of EntityPointer
    typedef typename GridImp::template Codim<0>::EntityPointer EntityPointer;

    //! level of this element
    int level () const;

    //! Constructor
    ALU2dGridEntity(const FactoryType& factory, int level);

    //! Copy Constructor
    ALU2dGridEntity(const ALU2dGridEntity & org);

    //! geometry of this entity
    Geometry geometry () const;

    //! return type of geometry
    GeometryType type() const ;

    //! set item pointer to NULL
    void removeElement();

    /*! private methods, but public because of datahandle and template
        arguments of these methods
     */
    //! set element as normal entity
    void setElement(const ElementType &element, int face=-1, int level = -1) const;
    void setElement(const EntitySeed& seed ) const;
    void setElement(const HElementType & el, const VertexType & vx);
    void setElement(const ALU2dGridEntity & org) const
    {
      setElement(*(org.item_), org.face_);
    }

    //! compare 2 elements
    bool equals ( const ALU2dGridEntity<cd,dim,GridImp> & org ) const;

    //! return partition type of this entity ( see grid.hh )
    //! dummy implementation return InteriorEntity
    PartitionType partitionType() const { return InteriorEntity; }

    /**
       \brief Id of the boundary which is associated with
       the entity, returns 0 for inner entities, arbitrary int otherwise
     */
    int boundaryId () const;

    /*! Location of this vertex within a mesh entity of codimension 0 on the coarse grid.
       This can speed up on-the-fly interpolation for linear conforming elements
       Possibly this is sufficient for all applications we want on-the-fly.
     */
    EntityPointer ownersFather () const;

    //! my position in local coordinates of the owners father
    FieldVector<alu2d_ctype, dim>& positionInOwnersFather () const;

    //! return reference to grid
    const GridImp& grid() const { return factory_.grid(); }

    //! return reference to factory
    const FactoryType& factory() const { return factory_; }

    //! return reference to current item
    ElementType& getItem() const
    {
      assert( item_ );
      return *item_;
    }

    //! return seed of entity
    EntitySeed seed() const
    {
      return EntitySeed( getItem(), level(), getFace() );
    }

    // return internal face
    int getFace() const { return face_; }

    //! index is unique within the grid hierachie and per codim
    int getIndex () const;

  private:
    //! the factory to create entities
    const FactoryType& factory_;

    //! corresponding ALU2dGridElement
    mutable ElementType * item_;
    //! the current geometry

    mutable GeometryImpl geoObj_;

    mutable int level_;
    mutable int face_;
  };

  /*!
     A Grid is a container of grid entities. An entity is parametrized by the codimension.
     An entity of codimension c in dimension d is a d-c dimensional object.

     Entities of codimension 0 ("elements") are defined through template specialization. Note
     that this specialization has an extended interface compared to the general case

     Entities of codimension 0  allow to visit all neighbors, where
     a neighbor is an entity of codimension 0 which has a common entity of codimension 1 with the
     These neighbors are accessed via an iterator. This allows the implementation of
     non-matching meshes. The number of neigbors may be different from the number of faces/edges
     of an element!
   */
  //***********************
  //
  //  --ALU2dGridEntity
  //  --0Entity
  //
  //***********************
  template<int dim, class GridImp>
  class ALU2dGridEntity<0,dim,GridImp>
    : public EntityDefaultImplementation<0,dim,GridImp,ALU2dGridEntity>
  {
    static const int dimworld = GridImp::dimensionworld;
    static const ALU2DSPACE ElementType eltype = GridImp::elementType;

    friend class ALU2dGrid< dim, dimworld, eltype >;
    friend class ALU2dGridIntersectionIterator < GridImp >;
    friend class ALU2dGridIntersectionIterator < const GridImp >;
    friend class ALU2dGridLevelIntersectionIterator < GridImp >;
    friend class ALU2dGridLevelIntersectionIterator < const GridImp >;
    friend class ALU2dGridLeafIntersectionIterator < GridImp >;
    friend class ALU2dGridLeafIntersectionIterator < const GridImp >;
    friend class ALU2dGridHierarchicIterator   < const GridImp >;
    friend class ALU2dGridHierarchicIterator   < GridImp >;
    friend class ALU2dGridLevelIterator <0,All_Partition,GridImp>;
    friend class ALU2dGridLevelIterator <1,All_Partition,GridImp>;
    friend class ALU2dGridLevelIterator <2,All_Partition,GridImp>;
    friend class ALU2dGridLeafIterator <0, All_Partition,GridImp>;
    friend class ALU2dGridLeafIterator <1, All_Partition,GridImp>;
    friend class ALU2dGridLeafIterator <2, All_Partition,GridImp>;
    friend class ALU2dGridMakeableEntity<0,dim,GridImp>;

    friend class ALU2dGridHierarchicIndexSet<dim,dimworld,eltype>;

    typedef typename ALU2dImplTraits< dimworld, eltype >::HElementType HElementType ;

    typedef typename GridImp::Traits::template Codim< 0 >::GeometryImpl GeometryImpl;
    typedef typename GridImp::Traits::template Codim< 0 >::LocalGeometryImpl LocalGeometryImpl;

  public:
    typedef typename GridImp :: GridObjectFactoryType FactoryType;

    //! type of our Geometry interface
    typedef typename GridImp::template Codim<0>::Geometry Geometry;
    //! type of corresponding interface local geometry
    typedef typename GridImp::template Codim<0>::LocalGeometry LocalGeometry;

    //! typedef of my type
    typedef typename GridImp::template Codim<0>::EntitySeed EntitySeed;

    //! tpye of intersection iterator
    typedef LeafIntersectionIteratorWrapper< GridImp > ALU2dGridLeafIntersectionIteratorType;
    typedef LevelIntersectionIteratorWrapper< GridImp > ALU2dGridLevelIntersectionIteratorType;
    typedef ALU2dGridLeafIntersectionIteratorType ALU2dGridIntersectionIteratorType;

    //! type of entity interface
    typedef typename GridImp::template Codim<0>::Entity Entity;
    //! tpye of entitypointer interface
    //typedef typename GridImp::template Codim<0>::EntityPointer EntityPointer;
    typedef ALU2dGridEntityPointer<0,GridImp> EntityPointer;

    template <int cd>
    struct Codim
    {
      typedef typename GridImp::template Codim<cd>::EntityPointer EntityPointer;
    };

    //! Constructor creating empty Entity
    ALU2dGridEntity(const FactoryType& factory, int level);

    //! Constructor creating empty Entity
    ALU2dGridEntity(const ALU2dGridEntity & org);

    //! level of this element
    int level () const ;

    //! geometry of this entity
    Geometry geometry () const;

    //! return type of geometry
    GeometryType type() const ;

    /*! Intra-element access to entities of codimension cc > codim. Return number of entities
        with codimension cc.
     */
    template<int cc>
    int count () const
    {
      assert( item_ );
      return (cc==0) ? 1 : item_->numvertices();
    }

    /**
       \brief Id of the boundary which is associated with
       the entity, returns 0 for inner entities, arbitrary int otherwise
     */
    int boundaryId () const {
      // elements are always inside of our Domain
      return 0;
    }

    /*! Intra-level access to intersection with neighboring elements.
       A neighbor is an entity of codimension 0
       which has an entity of codimension 1 in commen with this entity. Access to neighbors
       is provided using iterators. This allows meshes to be nonmatching. Returns iterator
       referencing the first neighbor. */
    //! \deprecated Use ileafbegin() instead. This method will be removed after Dune 2.3
    // As ibegin() and iend() are deprecated these methods will deliver a LeafIntersectionIterator
    ALU2dGridIntersectionIteratorType ibegin () const
    DUNE_DEPRECATED_MSG("Use ileafbegin() instead.")
    {
      return ileafbegin();
    }
    //! Reference to one past the last intersection with neighbor
    //! \deprecated Use ileafend() instead. This method will be removed after Dune 2.3
    ALU2dGridIntersectionIteratorType iend () const
    DUNE_DEPRECATED_MSG("Use ileafend() instead.")
    {
      return ileafend();
    }

    ALU2dGridLevelIntersectionIteratorType ilevelbegin () const
    {
      return ALU2dGridLevelIntersectionIteratorType( *this, this->level(),false);
    }
    ALU2dGridLevelIntersectionIteratorType ilevelend () const
    {
      return ALU2dGridLevelIntersectionIteratorType( *this, this->level(),true);
    }
    ALU2dGridLeafIntersectionIteratorType ileafbegin () const
    {
      return ALU2dGridLeafIntersectionIteratorType( *this, this->level(), false);
    }
    ALU2dGridLeafIntersectionIteratorType ileafend () const
    {
      return ALU2dGridLeafIntersectionIteratorType( *this, this->level(),true);
    }

    //! returns true if Entity is leaf (i.e. has no children)
    bool isLeaf () const;

    //! Inter-level access to father element on coarser grid.
    //! Assumes that meshes are nested.
    EntityPointer father () const;

    //! returns true if father entity exists
    bool hasFather () const
    {
      return (this->level()>0);
    }

    /*! Inter-level access to son elements on higher levels<=maxlevel.
       This is provided for sparsely stored nested unstructured meshes.
       Returns iterator to first son.
     */
    ALU2dGridHierarchicIterator<GridImp> hbegin (int maxLevel) const
    {
      return ALU2dGridHierarchicIterator<GridImp> (factory(), *item_ , maxLevel,false);
    }

    //! Returns iterator to one past the last son
    ALU2dGridHierarchicIterator<GridImp> hend (int maxLevel) const
    {
      return ALU2dGridHierarchicIterator<GridImp> (factory(), *item_, maxLevel,true);
    }

    //! Provide access to mesh entity i of given codimension. Entities
    //!  are numbered 0 ... count<cc>()-1
    template <int cc>
    typename Codim<cc>::EntityPointer entity (int i) const;

    //! Provide access to mesh entity i of given codimension. Entities
    //!  are numbered 0 ... count<cc>()-1
    template< int codim >
    typename Codim< codim >::EntityPointer subEntity ( int i ) const
    {
      int j = i;
      // apply mapping for codim 1
      // dune to alu
      if( codim == 1 )
      {
        if( item_->numvertices() == 3 )
          j = 2 - i;
        else
          switch (i) { case 0 : j=2;break;
                     case 1 : j=0;break;
                     case 2 : j=3;break;
                     case 3 : j=1;break;}
      }
      else if ( codim == 2 )
      {
        if( item_->numvertices() == 4 )
        {
          switch (i) { case 0 : j=0;break;
                     case 1 : j=1;break;
                     case 2 : j=3;break;
                     case 3 : j=2;break;}
        }
      }
      return entity< codim >( j );
    }

    //! return partition type of this entity ( see grid.hh )
    PartitionType partitionType() const
    {
#if ALU2DGRID_PARALLEL
      return grid().rankManager().partitionType( item_->getIndex() );
#else
      return InteriorEntity;
#endif
    }

    /**
       \brief The boundaryId of the i-th subentity of codimension <tt>cc</tt>

       This does the same as <code>entity<cc>(i).boundaryId()</code>, but it is
       usually a lot faster.
     */
    template <int cc>
    int subBoundaryId  ( int i ) const;


    /*! Location of this element relative to the reference element
       of the father. This is sufficient to interpolate all
       dofs in conforming case. Nonconforming may require access to
       neighbors of father and computations with local coordinates.
       On the fly case is somewhat inefficient since dofs  are visited
       several times. If we store interpolation matrices, this is tolerable.
       We assume that on-the-fly implementation of numerical algorithms
       is only done for simple discretizations. Assumes that meshes are nested.
     */

    LocalGeometry geometryInFather () const;

    //! The former state() method has been replaced by:
    bool mightVanish () const
    {
      return ((item_->is(ALU2DSPACE Refco::crs))==1);
    }

    bool isNew () const
    {
      return ((item_->wasRefined())==1);
    }

    //***************************************************************
    //  Interface for Adaptation
    //***************************************************************

  public:
    //! marks an element for refCount refines. if refCount is negative the
    //! element is coarsend -refCount times
    //! mark returns true if element was marked, otherwise false
    bool mark(int refCount) const;

    //! return current adaptation mark of element
    int getMark() const;

    /*! private methods, but public because of datahandle and template
        arguments of these methods
     */
    void setElement(const HElementType &element, int face=-1, int level = -1) const;
    void setElement(const EntitySeed& seed ) const;

    void setElement(const ALU2dGridEntity & org) const {
      setElement(*(org.item_));
    }

    //! set actual walk level
    void reset ( int l );

    //! set item pointer to NULL
    void removeElement();

    //! compare 2 entities, which means compare the item pointers
    bool equals ( const ALU2dGridEntity<0,dim,GridImp> & org ) const;

    // return reference to HElement (needed by IntersectionIterator)
    HElementType & getItem() const
    {
      assert( item_ );
      return *item_;
    }

    //! return seed of entity
    EntitySeed seed() const
    {
      return EntitySeed( getItem() );
    }

    //! return reference to grid
    const GridImp& grid() const { return factory_.grid(); }

    //! return reference to factory
    const FactoryType& factory() const { return factory_; }

    // return internal face
    int getFace() const { return -1; }

    //! index is unique within the grid hierachie and per codim
    int getIndex () const;

  private:
    //! return which number of child we are, i.e. 0 or 1
    int nChild () const;

    //! return index of sub entity with codim = cc and local number i
    //! i.e. return global number of vertex i
    //! for use in hierarchical index set
    template<int cc> int getSubIndex (int i) const;

    int subIndex (int i, unsigned int codim) const;

    //! the factory to create entities
    const FactoryType& factory_;

    //! the current element of grid
    mutable HElementType *item_;

    //! the current geometry
    mutable GeometryImpl geoObj_;

    //! is true if entity is leaf entity
    mutable bool isLeaf_;

  }; // end of ALU2dGridEntity codim = 0


  //**********************************************************************
  //
  // --ALU2dGridEntityPointer
  // --EntityPointer
  // --EnPointer
  //**********************************************************************
  /*!
     Enables iteration over all entities of a given codimension and level of a grid.
   */
  template< int codim, class GridImp >
  class ALU2dGridEntityPointer
  {
    // type of this class
    typedef ALU2dGridEntityPointer< codim, GridImp > ThisType;

    static const int dim = GridImp::dimension;
    static const int dimworld = GridImp::dimensionworld;
    static const ALU2DSPACE ElementType eltype = GridImp::elementType;

    typedef typename Dune::ALU2dImplTraits< dimworld, eltype >::template Codim<codim>::InterfaceType ElementType;

  public:
    typedef typename GridImp :: GridObjectFactoryType FactoryType;

    enum { codimension = codim };

    //! type of stored entity (interface)
    typedef typename GridImp::template Codim<codimension>::Entity Entity;

    //! type of the seed
    typedef typename GridImp::template Codim<codimension>::EntitySeed EntitySeed;
    //! tpye of stored entity (implementation)
    typedef ALU2dGridEntity<codimension,dim,GridImp> EntityImp;
    typedef MakeableInterfaceObject<Entity> EntityObj;

    typedef ALU2dGridEntityPointer<codimension,GridImp> EntityPointerImp;

    //! Constructor for EntityPointer that points to an element
    ALU2dGridEntityPointer ( const FactoryType& factory,
                             const ElementType &item,
                             int face = -1,
                             int level = -1
                             );

    //! Constructor for EntityPointer init of Level- and LeafIterator
    ALU2dGridEntityPointer(const FactoryType& factory, const EntitySeed& seed) ;

    //! Constructor for EntityPointer init of Level- and LeafIterator
    ALU2dGridEntityPointer(const EntityImp& entity) ;

    //! Constructor for EntityPointer init of Level- and LeafIterator
    ALU2dGridEntityPointer(const FactoryType& factory) ;

    //! Copy Constructor
    ALU2dGridEntityPointer(const ThisType & org) ;

    //! Destructor
    ~ALU2dGridEntityPointer();

    //! equality
    // this may have to be changed!
    bool equals (const ThisType & i) const;

    //! dereferencing
    Entity & dereference() const ;

    //! ask for level of entities
    int level () const;

    //! assigment operator
    ThisType & operator = (const ThisType & org);

    //! return reference top grid
    const GridImp& grid() const { return factory_.grid(); }

  protected:
    EntityImp & entityImp();
    const EntityImp & entityImp() const;

    //! has to be called when iterator is finished
    void done ();

    //! update underlying item pointer and set entity
    void updateEntityPointer( ElementType * item, int face=-1, int level=-1 );

    //! reference to entity factory
    const FactoryType& factory_;

    //! the essential information
    EntitySeed seed_ ;

    //! entity that this EntityPointer points to
    mutable EntityObj * entity_;
  };

} // end namespace Dune

#include "entity_imp.cc"
#endif