This file is indexed.

/usr/include/CGAL/eigen.h is in libcgal-dev 4.5-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
// Copyright (c) 2005  INRIA Sophia-Antipolis (France).
// All rights reserved.
//
// This file is part of CGAL (www.cgal.org); you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public License as
// published by the Free Software Foundation; either version 3 of the License,
// or (at your option) any later version.
//
// Licensees holding a valid commercial license may use this file in
// accordance with the commercial license agreement provided with the software.
//
// This file is provided AS IS with NO WARRANTY OF ANY KIND, INCLUDING THE
// WARRANTY OF DESIGN, MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.
//
// $URL$
// $Id$
// 
//
// Author(s)     : Bruno Levy, Pierre Alliez

#ifndef CGAL_EIGEN_H
#define CGAL_EIGEN_H

#include <cmath>
#include <CGAL/number_utils.h>

namespace CGAL {

namespace internal {

template <class FT>
void eigen_symmetric(const FT *mat, 
                     const int n, 
                     FT *eigen_vectors, 
                     FT *eigen_values,
                     const int MAX_ITER = 100) 
{
  static const FT EPSILON = (FT)0.00001;
      
  // number of entries in mat
  int nn = (n*(n+1))/2;
      
  // copy matrix
  FT *a = new FT[nn];
  int ij;
  for(ij=0; ij<nn; ij++) 
    a[ij] = mat[ij];
  // Fortran-porting
  a--;
      
  // init diagonalization matrix as the unit matrix
  FT *v = new FT[n*n];
  ij = 0;
  int i;
  for(i=0; i<n; i++)
    for(int j=0; j<n; j++) 
      if(i==j)
        v[ij++] = 1.0;
      else
        v[ij++] = 0.0;
  // Fortran-porting
  v--;
      
  // compute weight of the non diagonal terms 
  ij = 1;
  FT a_norm = 0.0;
  for(i=1; i<=n; i++)
    for(int j=1; j<=i; j++) 
    {
      if( i!=j ) 
      {
        FT a_ij = a[ij];
        a_norm += a_ij * a_ij;
      }
      ij++;
    }
      
  if(a_norm != 0.0) 
  {
    FT a_normEPS = a_norm * EPSILON;
    FT thr = a_norm;
  
    // rotations
    int nb_iter = 0;
    while(thr > a_normEPS && nb_iter < MAX_ITER) 
    {
      nb_iter++;
      FT thr_nn = thr / nn;
          
      for(int l=1; l< n; l++) 
      {
        for(int m=l+1; m<=n; m++) 
        {
          // compute sinx and cosx 
          int lq = (l*l-l)/2;
          int mq = (m*m-m)/2;
          
          int lm = l + mq;
          FT a_lm = a[lm];
          FT a_lm_2 = a_lm * a_lm;
          
          if(a_lm_2 < thr_nn)
            continue;
          
          int ll   = l + lq;
          int mm   = m + mq;
          FT a_ll = a[ll];
          FT a_mm = a[mm];
          
          FT delta = a_ll - a_mm;
          
          FT x;
          if(delta == 0.0)
            x = (FT) - CGAL_PI / 4; 
          else 
            x = (FT)(- std::atan( (a_lm+a_lm) / delta ) / 2.0);

          FT sinx    = std::sin(x);
          FT cosx    = std::cos(x);
          FT sinx_2  = sinx * sinx;
          FT cosx_2  = cosx * cosx;
          FT sincos  = sinx * cosx;
          
          // rotate L and M columns 
          int ilv = n*(l-1);
          int imv = n*(m-1);
          
          int i;
          for( i=1; i<=n;i++ ) 
          {
            if( (i!=l) && (i!=m) ) 
            {
              int iq = (i*i-i)/2;
              
              int im;
              if( i<m )  
                im = i + mq; 
              else
                im = m + iq;
              FT a_im = a[im];
              
              int il;
              if( i<l ) 
                il = i + lq; 
              else 
                il = l + iq;
              FT a_il = a[il];
              
              a[il] = a_il * cosx - a_im * sinx;
              a[im] = a_il * sinx + a_im * cosx;
            }
            
            ilv++;
            imv++;
            
            FT v_ilv = v[ilv];
            FT v_imv = v[imv];
            
            v[ilv] = cosx * v_ilv - sinx * v_imv;
            v[imv] = sinx * v_ilv + cosx * v_imv;
          } 
          
          x = a_lm * sincos; 
          x += x;
          
          a[ll] =  a_ll * cosx_2 + a_mm * sinx_2 - x;
          a[mm] =  a_ll * sinx_2 + a_mm * cosx_2 + x;
          a[lm] =  0.0;
          
          thr = CGAL::abs(thr - a_lm_2);
        }
      }
    }         
  }
      
  // convert indices and copy eigen values 
  a++;
  for(i=0; i<n; i++) 
  {
    int k = i + (i*(i+1))/2;
    eigen_values[i] = a[k];
  }
  delete [] a;
      
  // sort eigen values and vectors 
  int *index = new int[n];
  for(i=0; i<n; i++)
    index[i] = i;
      
  for(i=0; i<(n-1); i++)
  {
    FT x = eigen_values[i];
    int k = i;
        
    for(int j=i+1; j<n; j++) 
      if(x < eigen_values[j]) 
      {
        k = j;
        x = eigen_values[j];
      }
        
    eigen_values[k] = eigen_values[i];
    eigen_values[i] = x;
      
    int jj = index[k];
    index[k] = index[i];
    index[i] = jj;
  }


  // save eigen vectors 
  v++; // back to C++
  ij = 0;
  for(int k=0; k<n; k++ ) 
  {
    int ik = index[k]*n;
    for(int i=0; i<n; i++) 
      eigen_vectors[ij++] = v[ik++];
  }
  
  delete [] v;
  delete [] index;
}

} // end namespace internal

} //namespace CGAL

#endif // CGAL_EIGEN_H