/usr/lib/emboss/include/ensprojectionsegment.h is in emboss-lib 6.6.0+dfsg-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 | /* @include ensprojectionsegment **********************************************
**
** Ensembl Projection Segment functions
**
** @author Copyright (C) 1999 Ensembl Developers
** @author Copyright (C) 2006 Michael K. Schuster
** @version $Revision: 1.9 $
** @modified 2009 by Alan Bleasby for incorporation into EMBOSS core
** @modified $Date: 2012/02/04 10:30:24 $ by $Author: mks $
** @@
**
** This library is free software; you can redistribute it and/or
** modify it under the terms of the GNU Lesser General Public
** License as published by the Free Software Foundation; either
** version 2.1 of the License, or (at your option) any later version.
**
** This library is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
** Lesser General Public License for more details.
**
** You should have received a copy of the GNU Lesser General Public
** License along with this library; if not, write to the Free Software
** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
** MA 02110-1301, USA.
**
******************************************************************************/
#ifndef ENSPROJECTIONSEGMENT_H
#define ENSPROJECTIONSEGMENT_H
/* ========================================================================= */
/* ============================= include files ============================= */
/* ========================================================================= */
#include "ensslice.h"
AJ_BEGIN_DECLS
/* ========================================================================= */
/* =============================== constants =============================== */
/* ========================================================================= */
/* ========================================================================= */
/* ============================== public data ============================== */
/* ========================================================================= */
/* @data EnsPProjectionsegment ************************************************
**
** Ensembl Projection Segment
**
** @alias EnsSProjectionsegment
** @alias EnsOProjectionsegment
**
** @attr SourceStart [ajuint] Source start coordinate
** @attr SourceEnd [ajuint] Source end coordinate
** @attr TargetSlice [EnsPSlice] Target Ensembl Slice
** @attr Use [ajuint] Use counter
** @attr Padding [ajuint] Padding to alignment boundary
** @@
******************************************************************************/
typedef struct EnsSProjectionsegment
{
ajuint SourceStart;
ajuint SourceEnd;
EnsPSlice TargetSlice;
ajuint Use;
ajuint Padding;
} EnsOProjectionsegment;
#define EnsPProjectionsegment EnsOProjectionsegment*
/* ========================================================================= */
/* =========================== public functions ============================ */
/* ========================================================================= */
/*
** Prototype definitions
*/
EnsPProjectionsegment ensProjectionsegmentNewCpy(
const EnsPProjectionsegment ps);
EnsPProjectionsegment ensProjectionsegmentNewIni(ajuint srcstart,
ajuint srcend,
EnsPSlice trgslice);
EnsPProjectionsegment ensProjectionsegmentNewRef(EnsPProjectionsegment ps);
void ensProjectionsegmentDel(EnsPProjectionsegment *Pps);
ajuint ensProjectionsegmentGetSourceStart(const EnsPProjectionsegment ps);
ajuint ensProjectionsegmentGetSourceEnd(const EnsPProjectionsegment ps);
EnsPSlice ensProjectionsegmentGetTargetSlice(const EnsPProjectionsegment ps);
AjBool ensProjectionsegmentTrace(const EnsPProjectionsegment ps, ajuint level);
size_t ensProjectionsegmentCalculateMemsize(const EnsPProjectionsegment ps);
/*
** End of prototype definitions
*/
AJ_END_DECLS
#endif /* !ENSPROJECTIONSEGMENT_H */
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