/usr/lib/emboss/include/ensgvsource.h is in emboss-lib 6.6.0+dfsg-1.
This file is owned by root:root, with mode 0o644.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 | /* @include ensgvsource *******************************************************
**
** Ensembl Genetic Variation Source functions
**
** @author Copyright (C) 1999 Ensembl Developers
** @author Copyright (C) 2006 Michael K. Schuster
** @version $Revision: 1.8 $
** @modified 2009 by Alan Bleasby for incorporation into EMBOSS core
** @modified $Date: 2012/08/05 11:01:21 $ by $Author: mks $
** @@
**
** This library is free software; you can redistribute it and/or
** modify it under the terms of the GNU Lesser General Public
** License as published by the Free Software Foundation; either
** version 2.1 of the License, or (at your option) any later version.
**
** This library is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
** Lesser General Public License for more details.
**
** You should have received a copy of the GNU Lesser General Public
** License along with this library; if not, write to the Free Software
** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
** MA 02110-1301, USA.
**
******************************************************************************/
#ifndef ENSGVSOURCE_H
#define ENSGVSOURCE_H
/* ========================================================================= */
/* ============================= include files ============================= */
/* ========================================================================= */
#include "ensgvdata.h"
AJ_BEGIN_DECLS
/* ========================================================================= */
/* =============================== constants =============================== */
/* ========================================================================= */
/* ========================================================================= */
/* ============================== public data ============================== */
/* ========================================================================= */
/* ========================================================================= */
/* =========================== public functions ============================ */
/* ========================================================================= */
/*
** Prototype definitions
*/
/* Ensembl Genetic Variation Source */
EnsPGvsource ensGvsourceNewCpy(const EnsPGvsource gvs);
EnsPGvsource ensGvsourceNewIni(EnsPGvsourceadaptor gvsa,
ajuint identifier,
AjPStr name,
AjPStr version,
AjPStr description,
AjPStr url,
EnsEGvsourceSomatic gvss,
EnsEGvsourceType gvst);
EnsPGvsource ensGvsourceNewRef(EnsPGvsource gvs);
void ensGvsourceDel(EnsPGvsource *Pgvs);
EnsPGvsourceadaptor ensGvsourceGetAdaptor(const EnsPGvsource gvs);
AjPStr ensGvsourceGetDescription(const EnsPGvsource gvs);
ajuint ensGvsourceGetIdentifier(const EnsPGvsource gvs);
AjPStr ensGvsourceGetName(const EnsPGvsource gvs);
EnsEGvsourceSomatic ensGvsourceGetSomatic(const EnsPGvsource gvs);
EnsEGvsourceType ensGvsourceGetType(const EnsPGvsource gvs);
AjPStr ensGvsourceGetUrl(const EnsPGvsource gvs);
AjPStr ensGvsourceGetVersion(const EnsPGvsource gvs);
AjBool ensGvsourceSetAdaptor(EnsPGvsource gvs, EnsPGvsourceadaptor gvsa);
AjBool ensGvsourceSetDescription(EnsPGvsource gvs, AjPStr description);
AjBool ensGvsourceSetIdentifier(EnsPGvsource gvs, ajuint identifier);
AjBool ensGvsourceSetName(EnsPGvsource gvs, AjPStr name);
AjBool ensGvsourceSetSomatic(EnsPGvsource gvs, EnsEGvsourceSomatic gvss);
AjBool ensGvsourceSetType(EnsPGvsource gvs, EnsEGvsourceType gvst);
AjBool ensGvsourceSetUrl(EnsPGvsource gvs, AjPStr url);
AjBool ensGvsourceSetVersion(EnsPGvsource gvs, AjPStr version);
AjBool ensGvsourceTrace(const EnsPGvsource gvs, ajuint level);
size_t ensGvsourceCalculateMemsize(const EnsPGvsource gvs);
AjBool ensGvsourceMatch(const EnsPGvsource gvs1, const EnsPGvsource gvs2);
EnsEGvsourceSomatic ensGvsourceSomaticFromStr(
const AjPStr somatic);
const char *ensGvsourceSomaticToChar(
EnsEGvsourceSomatic gvss);
EnsEGvsourceType ensGvsourceTypeFromStr(
const AjPStr type);
const char *ensGvsourceTypeToChar(
EnsEGvsourceType gvst);
/* Ensembl Genetic Variation Source Adaptor */
EnsPGvsourceadaptor ensRegistryGetGvsourceadaptor(
EnsPDatabaseadaptor dba);
EnsPGvsourceadaptor ensGvsourceadaptorNew(EnsPDatabaseadaptor dba);
void ensGvsourceadaptorDel(EnsPGvsourceadaptor *Pgvsa);
EnsPBaseadaptor ensGvsourceadaptorGetBaseadaptor(
EnsPGvsourceadaptor gvsa);
EnsPDatabaseadaptor ensGvsourceadaptorGetDatabaseadaptor(
EnsPGvsourceadaptor gvsa);
AjBool ensGvsourceadaptorFetchAll(
EnsPGvsourceadaptor gvsa,
AjPList gvss);
AjBool ensGvsourceadaptorFetchAllbyGvsourceType(
EnsPGvsourceadaptor gvsa,
EnsEGvsourceType gvst,
AjPList gvss);
AjBool ensGvsourceadaptorFetchByIdentifier(
EnsPGvsourceadaptor gvsa,
ajuint identifier,
EnsPGvsource *Pgvs);
AjBool ensGvsourceadaptorFetchByName(
EnsPGvsourceadaptor gvsa,
const AjPStr name,
EnsPGvsource *Pgvs);
AjBool ensGvsourceadaptorFetchDefault(
EnsPGvsourceadaptor gvsa,
EnsPGvsource *Pgvs);
/*
** End of prototype definitions
*/
AJ_END_DECLS
#endif /* !ENSGVSOURCE_H */
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