This file is indexed.

/usr/lib/emboss/include/ensdatabaseconnection.h is in emboss-lib 6.6.0+dfsg-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
/* @include ensdatabaseconnection *********************************************
**
** Ensembl Database Connection functions
**
** @author Copyright (C) 1999 Ensembl Developers
** @author Copyright (C) 2006 Michael K. Schuster
** @version $Revision: 1.16 $
** @modified $Date: 2012/02/04 10:30:23 $ by $Author: mks $
** @modified $Date: 2012/02/04 10:30:23 $ by $Author: mks $
**
** This library is free software; you can redistribute it and/or
** modify it under the terms of the GNU Lesser General Public
** License as published by the Free Software Foundation; either
** version 2.1 of the License, or (at your option) any later version.
**
** This library is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
** Lesser General Public License for more details.
**
** You should have received a copy of the GNU Lesser General Public
** License along with this library; if not, write to the Free Software
** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
** MA  02110-1301,  USA.
**
******************************************************************************/

#ifndef ENSDATABASECONNECTION_H
#define ENSDATABASECONNECTION_H

/* ========================================================================= */
/* ============================= include files ============================= */
/* ========================================================================= */

#include "ajax.h"

AJ_BEGIN_DECLS




/* ========================================================================= */
/* =============================== constants =============================== */
/* ========================================================================= */




/* ========================================================================= */
/* ============================== public data ============================== */
/* ========================================================================= */

/* @data EnsPDatabaseconnection ***********************************************
**
** Ensembl Database Connection.
**
** Holds information to connect to a particular SQL database on a
** relational database management system (RDBMS) instance.
**
** @alias EnsSDatabaseconnection
** @alias EnsODatabaseconnection
**
** @attr Sqlconnection [AjPSqlconnection] AJAX SQL Connection
** @attr Username [AjPStr] User name
** @attr Password [AjPStr] Password
** @attr Hostname [AjPStr] Host name or IP address
** @attr Hostport [AjPStr] Host TCP/IP port
** @attr Socketfile [AjPStr] UNIX socket file
** @attr Databasename [AjPStr] SQL database name
** @attr Autodisconnect [AjBool] Automatic disconnections
** @attr Sqlconnectionclient [AjESqlconnectionClient] AJAX SQL
**                                                    Connection client
** @attr Timeout [ajuint] Timeout in seconds for closing idle, non-interactive
**                        connections
** @attr Use [ajuint] Use counter
**
** @@
******************************************************************************/

typedef struct EnsSDatabaseconnection
{
    AjPSqlconnection Sqlconnection;
    AjPStr Username;
    AjPStr Password;
    AjPStr Hostname;
    AjPStr Hostport;
    AjPStr Socketfile;
    AjPStr Databasename;
    AjBool Autodisconnect;
    AjESqlconnectionClient Sqlconnectionclient;
    ajuint Timeout;
    ajuint Use;
} EnsODatabaseconnection;

#define EnsPDatabaseconnection EnsODatabaseconnection*




/* ========================================================================= */
/* =========================== public functions ============================ */
/* ========================================================================= */

/*
** Prototype definitions
*/

EnsPDatabaseconnection ensDatabaseconnectionNewCpy(
    EnsPDatabaseconnection dbc,
    AjPStr database);

EnsPDatabaseconnection ensDatabaseconnectionNewIni(
    AjESqlconnectionClient client,
    AjPStr user,
    AjPStr password,
    AjPStr host,
    AjPStr port,
    AjPStr socketfile,
    AjPStr database,
    ajuint dbctimeout);

EnsPDatabaseconnection ensDatabaseconnectionNewRef(EnsPDatabaseconnection dbc);

EnsPDatabaseconnection ensDatabaseconnectionNewUrl(const AjPStr url);

void ensDatabaseconnectionDel(EnsPDatabaseconnection *Pdbc);

AjBool ensDatabaseconnectionGetAutodisconnect(
    const EnsPDatabaseconnection dbc);

AjPStr ensDatabaseconnectionGetDatabasename(
    const EnsPDatabaseconnection dbc);

AjPStr ensDatabaseconnectionGetHostname(
    const EnsPDatabaseconnection dbc);

AjPStr ensDatabaseconnectionGetHostport(
    const EnsPDatabaseconnection dbc);

AjPStr ensDatabaseconnectionGetPassword(
    const EnsPDatabaseconnection dbc);

AjPStr ensDatabaseconnectionGetSocketfile(
    const EnsPDatabaseconnection dbc);

AjPSqlconnection ensDatabaseconnectionGetSqlconnection(
    const EnsPDatabaseconnection dbc);

AjESqlconnectionClient ensDatabaseconnectionGetSqlconnectionclient(
    const EnsPDatabaseconnection dbc);

ajuint ensDatabaseconnectionGetTimeout(
    const EnsPDatabaseconnection dbc);

AjPStr ensDatabaseconnectionGetUsername(
    const EnsPDatabaseconnection dbc);

AjBool ensDatabaseconnectionSetAutodisconnect(
    EnsPDatabaseconnection dbc,
    AjBool autodisconnect);

AjBool ensDatabaseconnectionTrace(const EnsPDatabaseconnection dbc,
                                  ajuint level);

AjBool ensDatabaseconnectionIsConnected(const EnsPDatabaseconnection dbc);

AjBool ensDatabaseconnectionMatch(const EnsPDatabaseconnection dbc1,
                                  const EnsPDatabaseconnection dbc2);

AjBool ensDatabaseconnectionConnect(EnsPDatabaseconnection dbc);

AjBool ensDatabaseconnectionDisconnect(EnsPDatabaseconnection dbc);

AjBool ensDatabaseconnectionEscapeC(EnsPDatabaseconnection dbc,
                                    char **Ptxt,
                                    const AjPStr str);

AjBool ensDatabaseconnectionEscapeS(EnsPDatabaseconnection dbc,
                                    AjPStr *Pstr,
                                    const AjPStr str);

AjBool ensDatabaseconnectionSqlstatementDel(
    EnsPDatabaseconnection dbc,
    AjPSqlstatement *Psqls);

AjPSqlstatement ensDatabaseconnectionSqlstatementNew(
    EnsPDatabaseconnection dbc,
    const AjPStr statement);

AjBool ensDatabaseconnectionFetchUrl(const EnsPDatabaseconnection dbc,
                                     AjPStr *Purl);

/*
** End of prototype definitions
*/




AJ_END_DECLS

#endif /* !ENSDATABASECONNECTION_H */