/usr/lib/emboss/include/ensattribute.h is in emboss-lib 6.6.0+dfsg-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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**
** Ensembl Attribute functions
**
** @author Copyright (C) 1999 Ensembl Developers
** @author Copyright (C) 2006 Michael K. Schuster
** @version $Revision: 1.15 $
** @modified 2009 by Alan Bleasby for incorporation into EMBOSS core
** @modified $Date: 2012/08/05 10:29:03 $ by $Author: mks $
** @@
**
** This library is free software; you can redistribute it and/or
** modify it under the terms of the GNU Lesser General Public
** License as published by the Free Software Foundation; either
** version 2.1 of the License, or (at your option) any later version.
**
** This library is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
** Lesser General Public License for more details.
**
** You should have received a copy of the GNU Lesser General Public
** License along with this library; if not, write to the Free Software
** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
** MA 02110-1301, USA.
**
******************************************************************************/
#ifndef ENSATTRIBUTE_H
#define ENSATTRIBUTE_H
/* ========================================================================= */
/* ============================= include files ============================= */
/* ========================================================================= */
#include "ensdata.h"
AJ_BEGIN_DECLS
/* ========================================================================= */
/* =============================== constants =============================== */
/* ========================================================================= */
/* ========================================================================= */
/* ============================== public data ============================== */
/* ========================================================================= */
/* ========================================================================= */
/* =========================== public functions ============================ */
/* ========================================================================= */
/*
** Prototype definitions
*/
/* Ensembl Attribute */
EnsPAttribute ensAttributeNewCpy(const EnsPAttribute attribute);
EnsPAttribute ensAttributeNewIni(EnsPAttributetype at,
AjPStr value);
EnsPAttribute ensAttributeNewRef(EnsPAttribute attribute);
void ensAttributeDel(EnsPAttribute *Pattribute);
EnsPAttributetype ensAttributeGetAttributetype(const EnsPAttribute attribute);
AjPStr ensAttributeGetValue(const EnsPAttribute attribute);
AjBool ensAttributeTrace(const EnsPAttribute attribute, ajuint level);
size_t ensAttributeCalculateMemsize(const EnsPAttribute attribute);
AjPStr ensAttributeGetCode(const EnsPAttribute attribute);
AjPStr ensAttributeGetDescription(const EnsPAttribute attribute);
AjPStr ensAttributeGetName(const EnsPAttribute attribute);
/* Ensembl Attribute Adaptor */
EnsPAttributeadaptor ensRegistryGetAttributeadaptor(
EnsPDatabaseadaptor dba);
EnsPDatabaseadaptor ensAttributeadaptorGetDatabaseadaptor(
EnsPAttributeadaptor ata);
AjBool ensAttributeadaptorFetchAllbyGene(
EnsPAttributeadaptor ata,
const EnsPGene gene,
const AjPStr code,
AjPList attributes);
AjBool ensAttributeadaptorFetchAllbyOperon(
EnsPAttributeadaptor ata,
const EnsPOperon operon,
const AjPStr code,
AjPList attributes);
AjBool ensAttributeadaptorFetchAllbyOperontranscript(
EnsPAttributeadaptor ata,
const EnsPOperontranscript ot,
const AjPStr code,
AjPList attributes);
AjBool ensAttributeadaptorFetchAllbySeqregion(
EnsPAttributeadaptor ata,
const EnsPSeqregion sr,
const AjPStr code,
AjPList attributes);
AjBool ensAttributeadaptorFetchAllbySlice(
EnsPAttributeadaptor ata,
const EnsPSlice slice,
const AjPStr code,
AjPList attributes);
AjBool ensAttributeadaptorFetchAllbyTranscript(
EnsPAttributeadaptor ata,
const EnsPTranscript transcript,
const AjPStr code,
AjPList attributes);
AjBool ensAttributeadaptorFetchAllbyTranslation(
EnsPAttributeadaptor ata,
const EnsPTranslation translation,
const AjPStr code,
AjPList attributes);
/* Ensembl Attribute Type */
EnsPAttributetype ensAttributetypeNewCpy(const EnsPAttributetype at);
EnsPAttributetype ensAttributetypeNewIni(EnsPAttributetypeadaptor ata,
ajuint identifier,
AjPStr code,
AjPStr name,
AjPStr description);
EnsPAttributetype ensAttributetypeNewRef(EnsPAttributetype at);
void ensAttributetypeDel(EnsPAttributetype *Pat);
EnsPAttributetypeadaptor ensAttributetypeGetAdaptor(
const EnsPAttributetype at);
AjPStr ensAttributetypeGetCode(
const EnsPAttributetype at);
AjPStr ensAttributetypeGetDescription(
const EnsPAttributetype at);
ajuint ensAttributetypeGetIdentifier(
const EnsPAttributetype at);
AjPStr ensAttributetypeGetName(
const EnsPAttributetype at);
AjBool ensAttributetypeSetAdaptor(EnsPAttributetype at,
EnsPAttributetypeadaptor ata);
AjBool ensAttributetypeSetCode(EnsPAttributetype at,
AjPStr code);
AjBool ensAttributetypeSetDescription(EnsPAttributetype at,
AjPStr description);
AjBool ensAttributetypeSetIdentifier(EnsPAttributetype at,
ajuint identifier);
AjBool ensAttributetypeSetName(EnsPAttributetype at,
AjPStr name);
AjBool ensAttributetypeTrace(const EnsPAttributetype at, ajuint level);
size_t ensAttributetypeCalculateMemsize(const EnsPAttributetype at);
/* Ensembl Attribute Type Adaptor */
EnsPAttributetypeadaptor ensRegistryGetAttributetypeadaptor(
EnsPDatabaseadaptor dba);
EnsPAttributetypeadaptor ensAttributetypeadaptorNew(
EnsPDatabaseadaptor dba);
AjBool ensAttributetypeadaptorCacheClear(EnsPAttributetypeadaptor ata);
void ensAttributetypeadaptorDel(EnsPAttributetypeadaptor *Pata);
EnsPBaseadaptor ensAttributetypeadaptorGetBaseadaptor(
EnsPAttributetypeadaptor ata);
EnsPDatabaseadaptor ensAttributetypeadaptorGetDatabaseadaptor(
EnsPAttributetypeadaptor ata);
AjBool ensAttributetypeadaptorFetchAll(EnsPAttributetypeadaptor ata,
AjPList ats);
AjBool ensAttributetypeadaptorFetchByCode(EnsPAttributetypeadaptor ata,
const AjPStr code,
EnsPAttributetype *Pat);
AjBool ensAttributetypeadaptorFetchByIdentifier(EnsPAttributetypeadaptor ata,
ajuint identifier,
EnsPAttributetype *Pat);
/*
** End of prototype definitions
*/
AJ_END_DECLS
#endif /* !ENSATTRIBUTE_H */
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