/usr/lib/emboss/include/ajrefseqread.h is in emboss-lib 6.6.0+dfsg-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 | /* @include ajrefseqread ******************************************************
**
** AJAX reference sequence reading functions
**
** These functions control all aspects of AJAX refseqdec reading
**
** @author Copyright (C) 2010 Peter Rice
** @version $Revision: 1.4 $
** @modified Oct 5 pmr First version
** @modified $Date: 2011/10/18 14:23:40 $ by $Author: rice $
** @@
**
** This library is free software; you can redistribute it and/or
** modify it under the terms of the GNU Lesser General Public
** License as published by the Free Software Foundation; either
** version 2.1 of the License, or (at your option) any later version.
**
** This library is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
** Lesser General Public License for more details.
**
** You should have received a copy of the GNU Lesser General Public
** License along with this library; if not, write to the Free Software
** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
** MA 02110-1301, USA.
**
******************************************************************************/
#ifndef AJREFSEQREAD_H
#define AJREFSEQREAD_H
/* ========================================================================= */
/* ============================= include files ============================= */
/* ========================================================================= */
#include "ajdefine.h"
#include "ajrefseqdata.h"
AJ_BEGIN_DECLS
/* ========================================================================= */
/* =============================== constants =============================== */
/* ========================================================================= */
/* ========================================================================= */
/* ============================== public data ============================== */
/* ========================================================================= */
/* ========================================================================= */
/* =========================== public functions ============================ */
/* ========================================================================= */
/*
** Prototype definitions
*/
void ajRefseqallClear(AjPRefseqall thys);
void ajRefseqallDel(AjPRefseqall* pthis);
AjPRefseqall ajRefseqallNew(void);
const AjPStr ajRefseqallGetrefseqId(const AjPRefseqall thys);
void ajRefseqinClear(AjPRefseqin thys);
void ajRefseqinDel(AjPRefseqin* pthis);
AjPRefseqin ajRefseqinNew(void);
void ajRefseqinQryC(AjPRefseqin thys, const char* txt);
void ajRefseqinQryS(AjPRefseqin thys, const AjPStr str);
void ajRefseqinTrace(const AjPRefseqin thys);
void ajRefseqinprintBook(AjPFile outf);
void ajRefseqinprintHtml(AjPFile outf);
void ajRefseqinprintText(AjPFile outf, AjBool full);
void ajRefseqinprintWiki(AjPFile outf);
AjBool ajRefseqallNext(AjPRefseqall thys, AjPRefseq *Prefseq);
AjBool ajRefseqinRead(AjPRefseqin refseqin, AjPRefseq thys);
AjBool ajRefseqinformatTerm(const AjPStr term);
AjBool ajRefseqinformatTest(const AjPStr format);
void ajRefseqinExit(void);
const char* ajRefseqinTypeGetFields(void);
const char* ajRefseqinTypeGetQlinks(void);
AjPTable ajRefseqaccessGetDb(void);
const char* ajRefseqaccessMethodGetQlinks(const AjPStr method);
ajuint ajRefseqaccessMethodGetScope(const AjPStr method);
AjBool ajRefseqaccessMethodTest(const AjPStr method);
/*
** End of prototype definitions
*/
AJ_END_DECLS
#endif /* !AJREFSEQREAD_H */
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