This file is indexed.

/usr/lib/emboss/include/ajhist.h is in emboss-lib 6.6.0+dfsg-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
/* @include ajhist ************************************************************
**
** AJAX GRAPH (ajax histogram) functions
**
** These functions control all aspects of AJAX histogram.
**
** @author Copyright (C) 1998 Peter Rice
** @version $Revision: 1.25 $
** @modified 1988-11-12 pmr First version
** @modified 1999 ajb ANSIfication
** @modified $Date: 2011/09/27 11:19:27 $ by $Author: rice $
** @@
**
** This library is free software; you can redistribute it and/or
** modify it under the terms of the GNU Lesser General Public
** License as published by the Free Software Foundation; either
** version 2.1 of the License, or (at your option) any later version.
**
** This library is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
** Lesser General Public License for more details.
**
** You should have received a copy of the GNU Lesser General Public
** License along with this library; if not, write to the Free Software
** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
** MA  02110-1301,  USA.
**
******************************************************************************/

#ifndef AJHIST_H
#define AJHIST_H

/* ========================================================================= */
/* ============================= include files ============================= */
/* ========================================================================= */

#include "ajdefine.h"
#include "ajgraph.h"
#include "ajstr.h"
#include <stdlib.h>
#include <stdio.h>
#include <string.h>

AJ_BEGIN_DECLS




/* ========================================================================= */
/* =============================== constants =============================== */
/* ========================================================================= */




#define HIST_ONTOP      0
#define HIST_SIDEBYSIDE 1
#define HIST_SEPARATE   2

#define GRAPH_HIST (AJGRAPH_X_BOTTOM + AJGRAPH_Y_LEFT + AJGRAPH_Y_RIGHT + \
AJGRAPH_Y_INVERT_TICK + AJGRAPH_X_INVERT_TICK + AJGRAPH_Y_TICK + \
AJGRAPH_X_TICK + AJGRAPH_X_LABEL + AJGRAPH_Y_LABEL + AJGRAPH_TITLE )

#ifndef WIN32
extern ajint aj_hist_mark;
#else
#ifdef AJAXGDLL_EXPORTS
__declspec(dllexport) ajint aj_hist_mark;
#else
__declspec(dllimport) ajint aj_hist_mark;
#endif
#endif




/* ========================================================================= */
/* ============================== public data ============================== */
/* ========================================================================= */




/* @data AjPHistdata **********************************************************
**
** AJAX data structure for histogram graph data
**
** @attr data [float*] y coordinates
** @attr deletedata [AjBool] if true, delete data
** @attr colour [ajint] colour code
** @attr title [AjPStr] graph title
** @attr subtitle [AjPStr] graph subtitle
** @attr xaxis [AjPStr] x axis title
** @attr yaxis [AjPStr] y axis title
** @attr pattern [ajint] pattern code
** @attr Padding [char[4]] Padding to alignment boundary
** @@
******************************************************************************/

typedef struct AjSHistdata {
  float *data;
  AjBool deletedata;
  ajint colour;
  AjPStr title;
  AjPStr subtitle;
  AjPStr xaxis;
  AjPStr yaxis;
  ajint pattern;
  char Padding[4];
} AjOHistdata;
#define AjPHistdata AjOHistdata*




/* @data AjPHist **************************************************************
**
** AJAX data structure for histogram graph objects
**
**
** @attr numofsets [ajuint] number of current sets
** @attr numofsetsmax [ajuint] maximum number of sets
** @attr numofdatapoints [ajuint] number of data points
** @attr xmin [float] Lowest x value
** @attr xmax [float] Highest x value
** @attr displaytype [ajuint] Display type index
** @attr bins [ajuint] Number of histogram bins
** @attr BaW [AjBool] Black and white rendering if ajTrue
** @attr title [AjPStr] Plot title
** @attr subtitle [AjPStr] Plot subtitle
** @attr xaxis [AjPStr] x axis title
** @attr yaxisleft [AjPStr] y axis title
** @attr yaxisright [AjPStr] second y axis title for right side
** @attr graph [AjPGraph] Graph
** @attr hists [AjPHistdata*] Histogram bin data
** @@
******************************************************************************/

typedef struct AjSHist {
  ajuint numofsets;
  ajuint numofsetsmax;
  ajuint numofdatapoints;
  float xmin;
  float xmax;
  ajuint displaytype;
  ajuint bins;
  AjBool BaW;
  AjPStr title;
  AjPStr subtitle;
  AjPStr xaxis;
  AjPStr yaxisleft;
  AjPStr yaxisright;
  AjPGraph graph;
  AjPHistdata *hists;
} AjOHist;
#define AjPHist AjOHist*




/* ========================================================================= */
/* =========================== public functions ============================ */
/* ========================================================================= */



/*
** Prototype definitions
*/

void    ajHistogramClose (void);
void    ajHistDataCopy (AjPHist hist, ajuint indexnum, PLFLT const *data);
void    ajHistDel (AjPHist* hist);
void    ajHistDisplay (const AjPHist hist);
AjPHist ajHistNew (ajuint numofsets, ajuint numofpoints);
AjPHist ajHistNewG (ajuint numofsets, ajuint numofpoints, AjPGraph graph);
void    ajHistSetMono (AjPHist hist, AjBool set);
void    ajHistSetmultiColour(AjPHist hist, ajuint indexnum, ajint colour);
void    ajHistSetmultiTitleS (AjPHist hist, ajuint indexnum,
                              const AjPStr title);
void    ajHistSetmultiTitleC (AjPHist hist, ajuint indexnum, const char *title);
void    ajHistSetmultiXlabelS (AjPHist hist, ajuint indexnum,
                               const AjPStr title);
void    ajHistSetmultiXlabelC (AjPHist hist, ajuint indexnum,
                               const char *title);
void    ajHistSetmultiYlabelS (AjPHist hist, ajuint indexnum,
                               const AjPStr title);
void    ajHistSetmultiYlabelC (AjPHist hist, ajuint indexnum,
                               const char *title);
void    ajHistSetmultiPattern (AjPHist hist, ajuint indexnum, ajint style);
void    ajHistDataAdd (AjPHist hist, ajuint indexnum, PLFLT *data);
void    ajHistSetTitleC (AjPHist hist, const char* strng);
void    ajHistSetXlabelC (AjPHist hist, const char* strng);
void    ajHistSetYlabelC (AjPHist hist,const  char* strng);
void    ajHistSetRlabelC (AjPHist hist, const char* strng);

void    ajHistogramSetMark(ajint mark);

/*
** End of prototype definitions
*/

#ifdef AJ_COMPILE_DEPRECATED_BOOK
#endif
#ifdef AJ_COMPILE_DEPRECATED

__deprecated void    ajHistSetColour(AjPHist hist, ajuint indexnum,
                                     ajint colour);
__deprecated void    ajHistSetPattern (AjPHist hist, ajuint indexnum,
                                       ajint style);
__deprecated void    ajHistSetBlackandWhite (AjPHist hist, AjBool set);
__deprecated void    ajHistSetXAxisC (AjPHist hist, const char* strng);
__deprecated void    ajHistSetYAxisLeftC (AjPHist hist,const  char* strng);
__deprecated void    ajHistSetYAxisRightC (AjPHist hist, const char* strng);
__deprecated void    ajHistCopyData (AjPHist hist, ajuint indexnum,
                                     const PLFLT *data);
__deprecated void    ajHistSetPtrToData (AjPHist hist,
                                         ajint indexnum, PLFLT *data);
__deprecated void    ajHistSetMark(ajint mark);
__deprecated void    ajHistClose (void);
__deprecated void    ajHistDelete (AjPHist* hist);
__deprecated void    ajHistSetMultiTitle  (AjPHist hist, ajint indexnum,
                                           const AjPStr title);
__deprecated void    ajHistSetMultiTitleC (AjPHist hist, ajint indexnum,
                                           const char *title);
__deprecated void    ajHistSetMultiXTitle  (AjPHist hist, ajint indexnum,
                                            const AjPStr title);
__deprecated void    ajHistSetMultiXTitleC (AjPHist hist, ajint indexnum,
                                            const char *title);
__deprecated void    ajHistSetMultiYTitle  (AjPHist hist, ajint indexnum,
                                            const AjPStr title);
__deprecated void    ajHistSetMultiYTitleC (AjPHist hist, ajint indexnum,
                                            const char *title);

#endif

AJ_END_DECLS

#endif  /* !AJHIST_H */