/usr/lib/emboss/include/ajfileio.h is in emboss-lib 6.6.0+dfsg-1.
This file is owned by root:root, with mode 0o644.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 | /* @include ajfileio **********************************************************
**
** AJAX file routines
**
** @author Copyright (C) 1999 Peter Rice
** @version $Revision: 1.9 $
** @modified Peter Rice pmr@ebi.ac.uk I/O file functions from ajfile.c
** @modified $Date: 2011/12/19 16:35:36 $ by $Author: rice $
** @@
**
** This library is free software; you can redistribute it and/or
** modify it under the terms of the GNU Lesser General Public
** License as published by the Free Software Foundation; either
** version 2.1 of the License, or (at your option) any later version.
**
** This library is distributed in the hope that it will be useful,
** but WITHOUT ANY WARRANTY; without even the implied warranty of
** MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
** Lesser General Public License for more details.
**
** You should have received a copy of the GNU Lesser General Public
** License along with this library; if not, write to the Free Software
** Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
** MA 02110-1301, USA.
**
******************************************************************************/
#ifndef AJFILEIO_H
#define AJFILEIO_H
/* ========================================================================= */
/* ============================= include files ============================= */
/* ========================================================================= */
#include "ajdefine.h"
#include "ajfile.h"
#include <sys/stat.h>
AJ_BEGIN_DECLS
/* ========================================================================= */
/* =============================== constants =============================== */
/* ========================================================================= */
/* ========================================================================= */
/* ============================== public data ============================== */
/* ========================================================================= */
/* ========================================================================= */
/* =========================== public functions ============================ */
/* ========================================================================= */
/*
** Prototype definitions
*/
size_t ajReadbinBinary(AjPFile thys, size_t count,
size_t element_size, void* ptr);
size_t ajReadbinChar(AjPFile file, size_t len, char* buffer);
size_t ajReadbinCharTrim(AjPFile file, size_t len, char* buffer);
size_t ajReadbinInt(AjPFile thys, ajint *val);
size_t ajReadbinIntEndian(AjPFile thys, ajint *val);
size_t ajReadbinIntLocal(AjPFile thys, ajint *val);
size_t ajReadbinInt2(AjPFile thys, ajshort *val);
size_t ajReadbinInt2Endian(AjPFile thys, ajshort *val);
size_t ajReadbinInt2Local(AjPFile thys, ajshort *val);
size_t ajReadbinInt4(AjPFile thys, ajint *val);
size_t ajReadbinInt4Endian(AjPFile thys, ajint *val);
size_t ajReadbinInt4Local(AjPFile thys, ajint *val);
size_t ajReadbinInt8(AjPFile thys, ajlong *val);
size_t ajReadbinInt8Endian(AjPFile thys, ajlong *val);
size_t ajReadbinInt8Local(AjPFile thys, ajlong *val);
size_t ajReadbinStr(AjPFile file, size_t len, AjPStr* buffer);
size_t ajReadbinStrTrim(AjPFile file, size_t len, AjPStr* buffer);
size_t ajReadbinUint(AjPFile thys, ajuint *val);
size_t ajReadbinUint2(AjPFile thys, ajushort *val);
size_t ajReadbinUint4(AjPFile thys, ajuint *val);
size_t ajReadbinUint8(AjPFile thys, ajulong *val);
size_t ajReadbinUintEndian(AjPFile thys, ajuint *val);
size_t ajReadbinUint2Endian(AjPFile thys, ajushort *val);
size_t ajReadbinUint4Endian(AjPFile thys, ajuint *val);
size_t ajReadbinUint8Endian(AjPFile thys, ajulong *val);
size_t ajReadbinUintLocal(AjPFile thys, ajuint *val);
size_t ajReadbinUint2Local(AjPFile thys, ajushort *val);
size_t ajReadbinUint4Local(AjPFile thys, ajuint *val);
size_t ajReadbinUint8Local(AjPFile thys, ajulong *val);
size_t ajWritebinBinary(AjPFile file, size_t count,
size_t size, const void* buffer);
size_t ajWritebinByte(AjPFile thys, char ch);
size_t ajWritebinChar(AjPFile thys, const char* txt, size_t len);
size_t ajWritebinInt2(AjPFile thys, ajshort i);
size_t ajWritebinInt4(AjPFile thys, ajint i);
size_t ajWritebinInt8(AjPFile thys, ajlong i);
size_t ajWritebinNewline(AjPFile thys);
size_t ajWritebinStr(AjPFile thys, const AjPStr str, size_t len);
size_t ajWritebinUint2(AjPFile thys, ajushort u);
size_t ajWritebinUint4(AjPFile thys, ajuint u);
size_t ajWritebinUint8(AjPFile thys, ajulong iu);
AjBool ajWriteline(AjPFile file, const AjPStr line);
AjBool ajWritelineNewline(AjPFile file, const AjPStr line);
AjBool ajWritelineSpace(AjPFile file, const AjPStr line);
AjBool ajReadline(AjPFile file, AjPStr *Pdest);
AjBool ajReadlinePos(AjPFile file, AjPStr *Pdest, ajlong* Ppos);
AjBool ajReadlineTrim(AjPFile file, AjPStr *Pdest);
AjBool ajReadlineTrimPos(AjPFile file, AjPStr *Pdest, ajlong* Ppos);
AjBool ajReadlineAppend(AjPFile file, AjPStr* Pdest);
AjBool ajBuffreadLine(AjPFilebuff buff, AjPStr *pdest);
AjBool ajBuffreadLinePos(AjPFilebuff buff, AjPStr *pdest,
ajlong* Ppos);
AjBool ajBuffreadLineStore(AjPFilebuff buff, AjPStr* pdest,
AjBool store, AjPStr *astr);
AjBool ajBuffreadLinePosStore(AjPFilebuff buff, AjPStr* pdest,
ajlong* Ppos, AjBool store, AjPStr *astr);
AjBool ajBuffreadLineTrim(AjPFilebuff buff, AjPStr* pdest);
/*
** End of prototype definitions
*/
#ifdef AJ_COMPILE_DEPRECATED_BOOK
#endif /* AJ_COMPILE_DEPRECATED_BOOK */
#ifdef AJ_COMPILE_DEPRECATED
__deprecated void ajFileBuffLoad(AjPFilebuff thys);
__deprecated AjBool ajFileBuffGet(AjPFilebuff thys, AjPStr *pdest);
__deprecated AjBool ajFileBuffGetL(AjPFilebuff thys, AjPStr *pdest,
ajlong* fpos);
__deprecated AjBool ajFileBuffGetStore(AjPFilebuff thys, AjPStr* pdest,
AjBool store, AjPStr *astr);
__deprecated AjBool ajFileBuffGetStoreL(AjPFilebuff thys,
AjPStr* pdest, ajlong* fpos,
AjBool store, AjPStr *astr);
__deprecated AjBool ajFileBuffGetTrim(AjPFilebuff thys, AjPStr* pdest);
__deprecated AjBool ajFileGets(AjPFile thys, AjPStr *pdest);
__deprecated AjBool ajFileGetsL(AjPFile thys,
AjPStr *pdest, ajlong* fpos);
__deprecated AjBool ajFileGetsTrim(AjPFile thys, AjPStr *pdest);
__deprecated AjBool ajFileGetsTrimL(AjPFile thys,
AjPStr *pdest, ajlong* fpos);
__deprecated AjBool ajFileReadAppend(AjPFile thys, AjPStr* pbuff);
__deprecated AjBool ajFileReadLine(AjPFile thys, AjPStr *pdest);
__deprecated ajint ajFileWriteByte(AjPFile thys, char ch);
__deprecated ajint ajFileWriteInt2(AjPFile thys, ajshort i);
__deprecated ajint ajFileWriteInt4(AjPFile thys, ajint i);
__deprecated size_t ajFileRead(void* ptr, size_t element_size,
size_t count, AjPFile thys);
__deprecated size_t ajFileWrite(AjPFile file, const void* ptr,
size_t element_size, size_t count);
__deprecated ajint ajFileWriteStr(AjPFile thys,
const AjPStr str, ajuint len);
#endif /* AJ_COMPILE_DEPRECATED */
AJ_END_DECLS
#endif /* !AJFILEIO_H */
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