/usr/share/doc/ssake/examples/seedtest.log is in ssake-examples 3.8.2-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 | Running: ../SSAKE [v3.8.2]
-f Herpesvirus_3.60kb.reads.fa
-s Herpesvirus_3.60kb.seed.fa
-i 1
-j 20
-h 0
-w 5
-m 16
-o 2
-r 0.7
-t 0
-c 1
Coverage: seedtest.coverage.csv
Read position: seedtest.readposition
Pileup: seedtest.pileup
-z 100
Contigs: seedtest.contigs
Singlets: seedtest.singlets
Excluded reads: seedtest.short
Log: seedtest.log
=>Reading sequences initiated Fri May 16 12:30:25 PDT 2014
Using seed sequence file Herpesvirus_3.60kb.seed.fa for this assembly.
Note: ONLY sequences in Herpesvirus_3.60kb.seed.fa will be used as seeds (i.e. -f Herpesvirus_3.60kb.reads.fa and -g will NOT be used as seeds, only used for extension)
1877 total sequences (1485 unique)
Number of unique seed sequences: 1
=>Sequence assembly initiated Fri May 16 12:30:27 PDT 2014
Contig assembly executed normally Fri May 16 12:30:29 PDT 2014
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