/usr/lib/R/site-library/genetics/INDEX is in r-cran-genetics 1.3.8.1-1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 | HWE.chisq Perform Chi-Square Test for Hardy-Weinberg
Equilibrium
HWE.exact Exact Test of Hardy-Weinberg Equilibrium for
2-Allele Markers
HWE.test Estimate Disequilibrium and Test for
Hardy-Weinberg Equilibrium
LD Pairwise linkage disequilibrium between genetic
markers.
as.factor Undocumented functions
ci.balance Experimental Function to Correct Confidence
Intervals At or Near Boundaries of the
Parameter Space by 'Sliding' the Interval on
the Quantile Scale.
diseq Estimate or Compute Confidence Interval for the
Single-Marker Disequilibrium
expectedGenotypes Construct expected genotypes/haplotypes
according to known allele variants
genotype Genotype or Haplotype Objects.
gregorius Probability of Observing All Alleles with a
Given Frequency in a Sample of a Specified
Size.
groupGenotype Group genotype values
homozygote Extract Features of Genotype objects
locus Create and Manipulate Locus, Gene, and Marker
Objects
makeGenotypes Convert columns in a dataframe to genotypes or
haplotypes
order.genotype Order/sort genotype/haplotype object
plot.genotype Plot genotype object
power.casectrl Depreciated functions
print.LD Textual and graphical display of linkage
disequilibrium (LD) objects
summary.genotype Allele and Genotype Frequency from a Genotype
or Haplotype Object
write.pop.file Create genetics data files
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