This file is indexed.

/usr/lib/R/site-library/BSgenome/INDEX is in r-bioc-bsgenome 1.32.0-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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BSParams-class          Class "BSParams"
BSgenome-class          BSgenome objects
BSgenome-utils          BSgenome utilities
BSgenomeForge           The BSgenomeForge functions
GenomeData-class        Data on the genome
GenomeDataList-class    List of GenomeData objects
GenomeDescription-class
                        GenomeDescription objects
available.genomes       Find available/installed genomes
bsapply                 bsapply
gdReduce                Reduces arguments to a single GenomeData
                        instance
gdapply                 Applies a function to elements of a GenomeData
getSeq,BSgenome-method
                        getSeq method for BSgenome objects
injectSNPs              SNP injection