/usr/lib/python3/dist-packages/pandas/tests/test_nanops.py is in python3-pandas 0.14.1-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 | from __future__ import division, print_function
from functools import partial
import numpy as np
from pandas.core.common import isnull
import pandas.core.nanops as nanops
import pandas.util.testing as tm
nanops._USE_BOTTLENECK = False
class TestnanopsDataFrame(tm.TestCase):
def setUp(self):
np.random.seed(11235)
self.arr_shape = (11, 7, 5)
self.arr_float = np.random.randn(*self.arr_shape)
self.arr_float1 = np.random.randn(*self.arr_shape)
self.arr_complex = self.arr_float + self.arr_float1*1j
self.arr_int = np.random.randint(-10, 10, self.arr_shape)
self.arr_bool = np.random.randint(0, 2, self.arr_shape) == 0
self.arr_str = np.abs(self.arr_float).astype('S')
self.arr_utf = np.abs(self.arr_float).astype('U')
self.arr_date = np.random.randint(0, 20000,
self.arr_shape).astype('M8[ns]')
self.arr_tdelta = np.random.randint(0, 20000,
self.arr_shape).astype('m8[ns]')
self.arr_nan = np.tile(np.nan, self.arr_shape)
self.arr_float_nan = np.vstack([self.arr_float, self.arr_nan])
self.arr_float1_nan = np.vstack([self.arr_float1, self.arr_nan])
self.arr_nan_float1 = np.vstack([self.arr_nan, self.arr_float1])
self.arr_nan_nan = np.vstack([self.arr_nan, self.arr_nan])
self.arr_inf = self.arr_float*np.inf
self.arr_float_inf = np.vstack([self.arr_float, self.arr_inf])
self.arr_float1_inf = np.vstack([self.arr_float1, self.arr_inf])
self.arr_inf_float1 = np.vstack([self.arr_inf, self.arr_float1])
self.arr_inf_inf = np.vstack([self.arr_inf, self.arr_inf])
self.arr_nan_inf = np.vstack([self.arr_nan, self.arr_inf])
self.arr_float_nan_inf = np.vstack([self.arr_float,
self.arr_nan,
self.arr_inf])
self.arr_nan_float1_inf = np.vstack([self.arr_float,
self.arr_inf,
self.arr_nan])
self.arr_nan_nan_inf = np.vstack([self.arr_nan,
self.arr_nan,
self.arr_inf])
self.arr_obj = np.vstack([self.arr_float.astype('O'),
self.arr_int.astype('O'),
self.arr_bool.astype('O'),
self.arr_complex.astype('O'),
self.arr_str.astype('O'),
self.arr_utf.astype('O'),
self.arr_date.astype('O'),
self.arr_tdelta.astype('O')])
self.arr_nan_nanj = self.arr_nan + self.arr_nan*1j
self.arr_complex_nan = np.vstack([self.arr_complex, self.arr_nan_nanj])
self.arr_nan_infj = self.arr_inf*1j
self.arr_complex_nan_infj = np.vstack([self.arr_complex,
self.arr_nan_infj])
self.arr_float_2d = self.arr_float[:, :, 0]
self.arr_float1_2d = self.arr_float1[:, :, 0]
self.arr_complex_2d = self.arr_complex[:, :, 0]
self.arr_int_2d = self.arr_int[:, :, 0]
self.arr_bool_2d = self.arr_bool[:, :, 0]
self.arr_str_2d = self.arr_str[:, :, 0]
self.arr_utf_2d = self.arr_utf[:, :, 0]
self.arr_date_2d = self.arr_date[:, :, 0]
self.arr_tdelta_2d = self.arr_tdelta[:, :, 0]
self.arr_nan_2d = self.arr_nan[:, :, 0]
self.arr_float_nan_2d = self.arr_float_nan[:, :, 0]
self.arr_float1_nan_2d = self.arr_float1_nan[:, :, 0]
self.arr_nan_float1_2d = self.arr_nan_float1[:, :, 0]
self.arr_nan_nan_2d = self.arr_nan_nan[:, :, 0]
self.arr_nan_nanj_2d = self.arr_nan_nanj[:, :, 0]
self.arr_complex_nan_2d = self.arr_complex_nan[:, :, 0]
self.arr_inf_2d = self.arr_inf[:, :, 0]
self.arr_float_inf_2d = self.arr_float_inf[:, :, 0]
self.arr_nan_inf_2d = self.arr_nan_inf[:, :, 0]
self.arr_float_nan_inf_2d = self.arr_float_nan_inf[:, :, 0]
self.arr_nan_nan_inf_2d = self.arr_nan_nan_inf[:, :, 0]
self.arr_float_1d = self.arr_float[:, 0, 0]
self.arr_float1_1d = self.arr_float1[:, 0, 0]
self.arr_complex_1d = self.arr_complex[:, 0, 0]
self.arr_int_1d = self.arr_int[:, 0, 0]
self.arr_bool_1d = self.arr_bool[:, 0, 0]
self.arr_str_1d = self.arr_str[:, 0, 0]
self.arr_utf_1d = self.arr_utf[:, 0, 0]
self.arr_date_1d = self.arr_date[:, 0, 0]
self.arr_tdelta_1d = self.arr_tdelta[:, 0, 0]
self.arr_nan_1d = self.arr_nan[:, 0, 0]
self.arr_float_nan_1d = self.arr_float_nan[:, 0, 0]
self.arr_float1_nan_1d = self.arr_float1_nan[:, 0, 0]
self.arr_nan_float1_1d = self.arr_nan_float1[:, 0, 0]
self.arr_nan_nan_1d = self.arr_nan_nan[:, 0, 0]
self.arr_nan_nanj_1d = self.arr_nan_nanj[:, 0, 0]
self.arr_complex_nan_1d = self.arr_complex_nan[:, 0, 0]
self.arr_inf_1d = self.arr_inf.ravel()
self.arr_float_inf_1d = self.arr_float_inf[:, 0, 0]
self.arr_nan_inf_1d = self.arr_nan_inf[:, 0, 0]
self.arr_float_nan_inf_1d = self.arr_float_nan_inf[:, 0, 0]
self.arr_nan_nan_inf_1d = self.arr_nan_nan_inf[:, 0, 0]
def check_results(self, targ, res, axis):
res = getattr(res, 'asm8', res)
res = getattr(res, 'values', res)
if axis != 0 and hasattr(targ, 'shape') and targ.ndim:
res = np.split(res, [targ.shape[0]], axis=0)[0]
try:
tm.assert_almost_equal(targ, res)
except:
# There are sometimes rounding errors with
# complex and object dtypes.
# If it isn't one of those, re-raise the error.
if not hasattr(res, 'dtype') or res.dtype.kind not in ['c', 'O']:
raise
# convert object dtypes to something that can be split into
# real and imaginary parts
if res.dtype.kind == 'O':
if targ.dtype.kind != 'O':
res = res.astype(targ.dtype)
else:
try:
res = res.astype('c16')
except:
res = res.astype('f8')
try:
targ = targ.astype('c16')
except:
targ = targ.astype('f8')
# there should never be a case where numpy returns an object
# but nanops doesn't, so make that an exception
elif targ.dtype.kind == 'O':
raise
tm.assert_almost_equal(targ.real, res.real)
tm.assert_almost_equal(targ.imag, res.imag)
def check_fun_data(self, testfunc, targfunc,
testarval, targarval, targarnanval, **kwargs):
for axis in list(range(targarval.ndim))+[None]:
for skipna in [False, True]:
targartempval = targarval if skipna else targarnanval
try:
targ = targfunc(targartempval, axis=axis, **kwargs)
res = testfunc(testarval, axis=axis, skipna=skipna,
**kwargs)
self.check_results(targ, res, axis)
if skipna:
res = testfunc(testarval, axis=axis)
self.check_results(targ, res, axis)
if axis is None:
res = testfunc(testarval, skipna=skipna)
self.check_results(targ, res, axis)
if skipna and axis is None:
res = testfunc(testarval)
self.check_results(targ, res, axis)
except BaseException as exc:
exc.args += ('axis: %s of %s' % (axis, testarval.ndim-1),
'skipna: %s' % skipna,
'kwargs: %s' % kwargs)
raise
if testarval.ndim <= 1:
return
try:
testarval2 = np.take(testarval, 0, axis=-1)
targarval2 = np.take(targarval, 0, axis=-1)
targarnanval2 = np.take(targarnanval, 0, axis=-1)
except ValueError:
return
self.check_fun_data(testfunc, targfunc,
testarval2, targarval2, targarnanval2,
**kwargs)
def check_fun(self, testfunc, targfunc,
testar, targar=None, targarnan=None,
**kwargs):
if targar is None:
targar = testar
if targarnan is None:
targarnan = testar
testarval = getattr(self, testar)
targarval = getattr(self, targar)
targarnanval = getattr(self, targarnan)
try:
self.check_fun_data(testfunc, targfunc,
testarval, targarval, targarnanval, **kwargs)
except BaseException as exc:
exc.args += ('testar: %s' % testar,
'targar: %s' % targar,
'targarnan: %s' % targarnan)
raise
def check_funs(self, testfunc, targfunc,
allow_complex=True, allow_all_nan=True, allow_str=True,
allow_date=True, allow_obj=True,
**kwargs):
self.check_fun(testfunc, targfunc, 'arr_float', **kwargs)
self.check_fun(testfunc, targfunc, 'arr_float_nan', 'arr_float',
**kwargs)
self.check_fun(testfunc, targfunc, 'arr_int', **kwargs)
self.check_fun(testfunc, targfunc, 'arr_bool', **kwargs)
objs = [self.arr_float.astype('O'),
self.arr_int.astype('O'),
self.arr_bool.astype('O')]
if allow_all_nan:
self.check_fun(testfunc, targfunc, 'arr_nan', **kwargs)
if allow_complex:
self.check_fun(testfunc, targfunc, 'arr_complex', **kwargs)
self.check_fun(testfunc, targfunc,
'arr_complex_nan', 'arr_complex', **kwargs)
if allow_all_nan:
self.check_fun(testfunc, targfunc, 'arr_nan_nanj', **kwargs)
objs += [self.arr_complex.astype('O')]
if allow_str:
self.check_fun(testfunc, targfunc, 'arr_str', **kwargs)
self.check_fun(testfunc, targfunc, 'arr_utf', **kwargs)
objs += [self.arr_str.astype('O'),
self.arr_utf.astype('O')]
if allow_date:
try:
targfunc(self.arr_date)
except TypeError:
pass
else:
self.check_fun(testfunc, targfunc, 'arr_date', **kwargs)
objs += [self.arr_date.astype('O')]
try:
targfunc(self.arr_tdelta)
except TypeError:
pass
else:
self.check_fun(testfunc, targfunc, 'arr_tdelta', **kwargs)
objs += [self.arr_tdelta.astype('O')]
if allow_obj:
self.arr_obj = np.vstack(objs)
# some nanops handle object dtypes better than their numpy
# counterparts, so the numpy functions need to be given something
# else
if allow_obj == 'convert':
targfunc = partial(self._badobj_wrap,
func=targfunc, allow_complex=allow_complex)
self.check_fun(testfunc, targfunc, 'arr_obj', **kwargs)
def check_funs_ddof(self, testfunc, targfunc,
allow_complex=True, allow_all_nan=True, allow_str=True,
allow_date=True, allow_obj=True,):
for ddof in range(3):
try:
self.check_funs(self, testfunc, targfunc,
allow_complex, allow_all_nan, allow_str,
allow_date, allow_obj,
ddof=ddof)
except BaseException as exc:
exc.args += ('ddof %s' % ddof,)
def _badobj_wrap(self, value, func, allow_complex=True, **kwargs):
if value.dtype.kind == 'O':
if allow_complex:
value = value.astype('c16')
else:
value = value.astype('f8')
return func(value, **kwargs)
def test_nanany(self):
self.check_funs(nanops.nanany, np.any,
allow_all_nan=False, allow_str=False, allow_date=False)
def test_nanall(self):
self.check_funs(nanops.nanall, np.all,
allow_all_nan=False, allow_str=False, allow_date=False)
def test_nansum(self):
self.check_funs(nanops.nansum, np.sum,
allow_str=False, allow_date=False)
def test_nanmean(self):
self.check_funs(nanops.nanmean, np.mean,
allow_complex=False, allow_obj=False,
allow_str=False, allow_date=False)
def test_nanmedian(self):
self.check_funs(nanops.nanmedian, np.median,
allow_complex=False, allow_str=False, allow_date=False,
allow_obj='convert')
def test_nanvar(self):
self.check_funs_ddof(nanops.nanvar, np.var,
allow_complex=False, allow_date=False)
def test_nansem(self):
tm.skip_if_no_package('scipy.stats')
self.check_funs_ddof(nanops.nansem, np.var,
allow_complex=False, allow_date=False)
def _minmax_wrap(self, value, axis=None, func=None):
res = func(value, axis)
if res.dtype.kind == 'm':
res = np.atleast_1d(res)
return res
def test_nanmin(self):
func = partial(self._minmax_wrap, func=np.min)
self.check_funs(nanops.nanmin, func,
allow_str=False, allow_obj=False)
def test_nanmax(self):
func = partial(self._minmax_wrap, func=np.max)
self.check_funs(nanops.nanmax, func,
allow_str=False, allow_obj=False)
def _argminmax_wrap(self, value, axis=None, func=None):
res = func(value, axis)
nans = np.min(value, axis)
nullnan = isnull(nans)
if res.ndim:
res[nullnan] = -1
elif (hasattr(nullnan, 'all') and nullnan.all() or
not hasattr(nullnan, 'all') and nullnan):
res = -1
return res
def test_nanargmax(self):
func = partial(self._argminmax_wrap, func=np.argmax)
self.check_funs(nanops.nanargmax, func,
allow_str=False, allow_obj=False)
def test_nanargmin(self):
func = partial(self._argminmax_wrap, func=np.argmin)
if tm.sys.version_info[0:2] == (2, 6):
self.check_funs(nanops.nanargmin, func,
allow_date=False,
allow_str=False, allow_obj=False)
else:
self.check_funs(nanops.nanargmin, func,
allow_str=False, allow_obj=False)
def _skew_kurt_wrap(self, values, axis=None, func=None):
if not isinstance(values.dtype.type, np.floating):
values = values.astype('f8')
result = func(values, axis=axis, bias=False)
# fix for handling cases where all elements in an axis are the same
if isinstance(result, np.ndarray):
result[np.max(values, axis=axis) == np.min(values, axis=axis)] = 0
return result
elif np.max(values) == np.min(values):
return 0.
return result
def test_nanskew(self):
tm.skip_if_no_package('scipy.stats')
from scipy.stats import skew
func = partial(self._skew_kurt_wrap, func=skew)
self.check_funs(nanops.nanskew, func,
allow_complex=False, allow_str=False, allow_date=False)
def test_nankurt(self):
tm.skip_if_no_package('scipy.stats')
from scipy.stats import kurtosis
func1 = partial(kurtosis, fisher=True)
func = partial(self._skew_kurt_wrap, func=func1)
self.check_funs(nanops.nankurt, func,
allow_complex=False, allow_str=False, allow_date=False)
def test_nanprod(self):
self.check_funs(nanops.nanprod, np.prod,
allow_str=False, allow_date=False)
def check_nancorr_nancov_2d(self, checkfun, targ0, targ1, **kwargs):
res00 = checkfun(self.arr_float_2d, self.arr_float1_2d,
**kwargs)
res01 = checkfun(self.arr_float_2d, self.arr_float1_2d,
min_periods=len(self.arr_float_2d)-1,
**kwargs)
tm.assert_almost_equal(targ0, res00)
tm.assert_almost_equal(targ0, res01)
res10 = checkfun(self.arr_float_nan_2d, self.arr_float1_nan_2d,
**kwargs)
res11 = checkfun(self.arr_float_nan_2d, self.arr_float1_nan_2d,
min_periods=len(self.arr_float_2d)-1,
**kwargs)
tm.assert_almost_equal(targ1, res10)
tm.assert_almost_equal(targ1, res11)
targ2 = np.nan
res20 = checkfun(self.arr_nan_2d, self.arr_float1_2d,
**kwargs)
res21 = checkfun(self.arr_float_2d, self.arr_nan_2d,
**kwargs)
res22 = checkfun(self.arr_nan_2d, self.arr_nan_2d,
**kwargs)
res23 = checkfun(self.arr_float_nan_2d, self.arr_nan_float1_2d,
**kwargs)
res24 = checkfun(self.arr_float_nan_2d, self.arr_nan_float1_2d,
min_periods=len(self.arr_float_2d)-1,
**kwargs)
res25 = checkfun(self.arr_float_2d, self.arr_float1_2d,
min_periods=len(self.arr_float_2d)+1,
**kwargs)
tm.assert_almost_equal(targ2, res20)
tm.assert_almost_equal(targ2, res21)
tm.assert_almost_equal(targ2, res22)
tm.assert_almost_equal(targ2, res23)
tm.assert_almost_equal(targ2, res24)
tm.assert_almost_equal(targ2, res25)
def check_nancorr_nancov_1d(self, checkfun, targ0, targ1, **kwargs):
res00 = checkfun(self.arr_float_1d, self.arr_float1_1d,
**kwargs)
res01 = checkfun(self.arr_float_1d, self.arr_float1_1d,
min_periods=len(self.arr_float_1d)-1,
**kwargs)
tm.assert_almost_equal(targ0, res00)
tm.assert_almost_equal(targ0, res01)
res10 = checkfun(self.arr_float_nan_1d,
self.arr_float1_nan_1d,
**kwargs)
res11 = checkfun(self.arr_float_nan_1d,
self.arr_float1_nan_1d,
min_periods=len(self.arr_float_1d)-1,
**kwargs)
tm.assert_almost_equal(targ1, res10)
tm.assert_almost_equal(targ1, res11)
targ2 = np.nan
res20 = checkfun(self.arr_nan_1d, self.arr_float1_1d,
**kwargs)
res21 = checkfun(self.arr_float_1d, self.arr_nan_1d,
**kwargs)
res22 = checkfun(self.arr_nan_1d, self.arr_nan_1d,
**kwargs)
res23 = checkfun(self.arr_float_nan_1d,
self.arr_nan_float1_1d,
**kwargs)
res24 = checkfun(self.arr_float_nan_1d,
self.arr_nan_float1_1d,
min_periods=len(self.arr_float_1d)-1,
**kwargs)
res25 = checkfun(self.arr_float_1d,
self.arr_float1_1d,
min_periods=len(self.arr_float_1d)+1,
**kwargs)
tm.assert_almost_equal(targ2, res20)
tm.assert_almost_equal(targ2, res21)
tm.assert_almost_equal(targ2, res22)
tm.assert_almost_equal(targ2, res23)
tm.assert_almost_equal(targ2, res24)
tm.assert_almost_equal(targ2, res25)
def test_nancorr(self):
targ0 = np.corrcoef(self.arr_float_2d, self.arr_float1_2d)[0, 1]
targ1 = np.corrcoef(self.arr_float_2d.flat,
self.arr_float1_2d.flat)[0, 1]
self.check_nancorr_nancov_2d(nanops.nancorr, targ0, targ1)
targ0 = np.corrcoef(self.arr_float_1d, self.arr_float1_1d)[0, 1]
targ1 = np.corrcoef(self.arr_float_1d.flat,
self.arr_float1_1d.flat)[0, 1]
self.check_nancorr_nancov_1d(nanops.nancorr, targ0, targ1,
method='pearson')
def test_nancorr_pearson(self):
targ0 = np.corrcoef(self.arr_float_2d, self.arr_float1_2d)[0, 1]
targ1 = np.corrcoef(self.arr_float_2d.flat,
self.arr_float1_2d.flat)[0, 1]
self.check_nancorr_nancov_2d(nanops.nancorr, targ0, targ1,
method='pearson')
targ0 = np.corrcoef(self.arr_float_1d, self.arr_float1_1d)[0, 1]
targ1 = np.corrcoef(self.arr_float_1d.flat,
self.arr_float1_1d.flat)[0, 1]
self.check_nancorr_nancov_1d(nanops.nancorr, targ0, targ1,
method='pearson')
def test_nancorr_kendall(self):
tm.skip_if_no_package('scipy.stats')
from scipy.stats import kendalltau
targ0 = kendalltau(self.arr_float_2d, self.arr_float1_2d)[0]
targ1 = kendalltau(self.arr_float_2d.flat, self.arr_float1_2d.flat)[0]
self.check_nancorr_nancov_2d(nanops.nancorr, targ0, targ1,
method='kendall')
targ0 = kendalltau(self.arr_float_1d, self.arr_float1_1d)[0]
targ1 = kendalltau(self.arr_float_1d.flat, self.arr_float1_1d.flat)[0]
self.check_nancorr_nancov_1d(nanops.nancorr, targ0, targ1,
method='kendall')
def test_nancorr_spearman(self):
tm.skip_if_no_package('scipy.stats')
from scipy.stats import spearmanr
targ0 = spearmanr(self.arr_float_2d, self.arr_float1_2d)[0]
targ1 = spearmanr(self.arr_float_2d.flat, self.arr_float1_2d.flat)[0]
self.check_nancorr_nancov_2d(nanops.nancorr, targ0, targ1,
method='spearman')
targ0 = spearmanr(self.arr_float_1d, self.arr_float1_1d)[0]
targ1 = spearmanr(self.arr_float_1d.flat, self.arr_float1_1d.flat)[0]
self.check_nancorr_nancov_1d(nanops.nancorr, targ0, targ1,
method='spearman')
def test_nancov(self):
targ0 = np.cov(self.arr_float_2d, self.arr_float1_2d)[0, 1]
targ1 = np.cov(self.arr_float_2d.flat, self.arr_float1_2d.flat)[0, 1]
self.check_nancorr_nancov_2d(nanops.nancov, targ0, targ1)
targ0 = np.cov(self.arr_float_1d, self.arr_float1_1d)[0, 1]
targ1 = np.cov(self.arr_float_1d.flat, self.arr_float1_1d.flat)[0, 1]
self.check_nancorr_nancov_1d(nanops.nancov, targ0, targ1)
def check_nancomp(self, checkfun, targ0):
arr_float = self.arr_float
arr_float1 = self.arr_float1
arr_nan = self.arr_nan
arr_nan_nan = self.arr_nan_nan
arr_float_nan = self.arr_float_nan
arr_float1_nan = self.arr_float1_nan
arr_nan_float1 = self.arr_nan_float1
while targ0.ndim:
try:
res0 = checkfun(arr_float, arr_float1)
tm.assert_almost_equal(targ0, res0)
if targ0.ndim > 1:
targ1 = np.vstack([targ0, arr_nan])
else:
targ1 = np.hstack([targ0, arr_nan])
res1 = checkfun(arr_float_nan, arr_float1_nan)
tm.assert_almost_equal(targ1, res1)
targ2 = arr_nan_nan
res2 = checkfun(arr_float_nan, arr_nan_float1)
tm.assert_almost_equal(targ2, res2)
except Exception as exc:
exc.args += ('ndim: %s' % arr_float.ndim,)
raise
try:
arr_float = np.take(arr_float, 0, axis=-1)
arr_float1 = np.take(arr_float1, 0, axis=-1)
arr_nan = np.take(arr_nan, 0, axis=-1)
arr_nan_nan = np.take(arr_nan_nan, 0, axis=-1)
arr_float_nan = np.take(arr_float_nan, 0, axis=-1)
arr_float1_nan = np.take(arr_float1_nan, 0, axis=-1)
arr_nan_float1 = np.take(arr_nan_float1, 0, axis=-1)
targ0 = np.take(targ0, 0, axis=-1)
except ValueError:
break
def test_nangt(self):
targ0 = self.arr_float > self.arr_float1
self.check_nancomp(nanops.nangt, targ0)
def test_nange(self):
targ0 = self.arr_float >= self.arr_float1
self.check_nancomp(nanops.nange, targ0)
def test_nanlt(self):
targ0 = self.arr_float < self.arr_float1
self.check_nancomp(nanops.nanlt, targ0)
def test_nanle(self):
targ0 = self.arr_float <= self.arr_float1
self.check_nancomp(nanops.nanle, targ0)
def test_naneq(self):
targ0 = self.arr_float == self.arr_float1
self.check_nancomp(nanops.naneq, targ0)
def test_nanne(self):
targ0 = self.arr_float != self.arr_float1
self.check_nancomp(nanops.nanne, targ0)
def check_bool(self, func, value, correct, *args, **kwargs):
while getattr(value, 'ndim', True):
try:
res0 = func(value, *args, **kwargs)
if correct:
self.assertTrue(res0)
else:
self.assertFalse(res0)
except BaseException as exc:
exc.args += ('dim: %s' % getattr(value, 'ndim', value),)
raise
if not hasattr(value, 'ndim'):
break
try:
value = np.take(value, 0, axis=-1)
except ValueError:
break
def test__has_infs(self):
pairs = [('arr_complex', False),
('arr_int', False),
('arr_bool', False),
('arr_str', False),
('arr_utf', False),
('arr_complex', False),
('arr_complex_nan', False),
('arr_nan_nanj', False),
('arr_nan_infj', True),
('arr_complex_nan_infj', True)]
pairs_float = [('arr_float', False),
('arr_nan', False),
('arr_float_nan', False),
('arr_nan_nan', False),
('arr_float_inf', True),
('arr_inf', True),
('arr_nan_inf', True),
('arr_float_nan_inf', True),
('arr_nan_nan_inf', True)]
for arr, correct in pairs:
val = getattr(self, arr)
try:
self.check_bool(nanops._has_infs, val, correct)
except BaseException as exc:
exc.args += (arr,)
raise
for arr, correct in pairs_float:
val = getattr(self, arr)
try:
self.check_bool(nanops._has_infs, val, correct)
self.check_bool(nanops._has_infs, val.astype('f4'), correct)
self.check_bool(nanops._has_infs, val.astype('f2'), correct)
except BaseException as exc:
exc.args += (arr,)
raise
def test__isfinite(self):
pairs = [('arr_complex', False),
('arr_int', False),
('arr_bool', False),
('arr_str', False),
('arr_utf', False),
('arr_complex', False),
('arr_complex_nan', True),
('arr_nan_nanj', True),
('arr_nan_infj', True),
('arr_complex_nan_infj', True)]
pairs_float = [('arr_float', False),
('arr_nan', True),
('arr_float_nan', True),
('arr_nan_nan', True),
('arr_float_inf', True),
('arr_inf', True),
('arr_nan_inf', True),
('arr_float_nan_inf', True),
('arr_nan_nan_inf', True)]
func1 = lambda x: np.any(nanops._isfinite(x).ravel())
func2 = lambda x: np.any(nanops._isfinite(x).values.ravel())
for arr, correct in pairs:
val = getattr(self, arr)
try:
self.check_bool(func1, val, correct)
except BaseException as exc:
exc.args += (arr,)
raise
for arr, correct in pairs_float:
val = getattr(self, arr)
try:
self.check_bool(func1, val, correct)
self.check_bool(func1, val.astype('f4'), correct)
self.check_bool(func1, val.astype('f2'), correct)
except BaseException as exc:
exc.args += (arr,)
raise
def test__bn_ok_dtype(self):
self.assertTrue(nanops._bn_ok_dtype(self.arr_float.dtype, 'test'))
self.assertTrue(nanops._bn_ok_dtype(self.arr_complex.dtype, 'test'))
self.assertTrue(nanops._bn_ok_dtype(self.arr_int.dtype, 'test'))
self.assertTrue(nanops._bn_ok_dtype(self.arr_bool.dtype, 'test'))
self.assertTrue(nanops._bn_ok_dtype(self.arr_str.dtype, 'test'))
self.assertTrue(nanops._bn_ok_dtype(self.arr_utf.dtype, 'test'))
self.assertFalse(nanops._bn_ok_dtype(self.arr_date.dtype, 'test'))
self.assertFalse(nanops._bn_ok_dtype(self.arr_tdelta.dtype, 'test'))
self.assertFalse(nanops._bn_ok_dtype(self.arr_obj.dtype, 'test'))
class TestEnsureNumeric(tm.TestCase):
def test_numeric_values(self):
# Test integer
self.assertEqual(nanops._ensure_numeric(1), 1, 'Failed for int')
# Test float
self.assertEqual(nanops._ensure_numeric(1.1), 1.1, 'Failed for float')
# Test complex
self.assertEqual(nanops._ensure_numeric(1 + 2j), 1 + 2j,
'Failed for complex')
def test_ndarray(self):
# Test numeric ndarray
values = np.array([1, 2, 3])
self.assertTrue(np.allclose(nanops._ensure_numeric(values), values),
'Failed for numeric ndarray')
# Test object ndarray
o_values = values.astype(object)
self.assertTrue(np.allclose(nanops._ensure_numeric(o_values), values),
'Failed for object ndarray')
# Test convertible string ndarray
s_values = np.array(['1', '2', '3'], dtype=object)
self.assertTrue(np.allclose(nanops._ensure_numeric(s_values), values),
'Failed for convertible string ndarray')
# Test non-convertible string ndarray
s_values = np.array(['foo', 'bar', 'baz'], dtype=object)
self.assertRaises(ValueError,
lambda: nanops._ensure_numeric(s_values))
def test_convertable_values(self):
self.assertTrue(np.allclose(nanops._ensure_numeric('1'), 1.0),
'Failed for convertible integer string')
self.assertTrue(np.allclose(nanops._ensure_numeric('1.1'), 1.1),
'Failed for convertible float string')
self.assertTrue(np.allclose(nanops._ensure_numeric('1+1j'), 1 + 1j),
'Failed for convertible complex string')
def test_non_convertable_values(self):
self.assertRaises(TypeError,
lambda: nanops._ensure_numeric('foo'))
self.assertRaises(TypeError,
lambda: nanops._ensure_numeric({}))
self.assertRaises(TypeError,
lambda: nanops._ensure_numeric([]))
if __name__ == '__main__':
import nose
nose.runmodule(argv=[__file__, '-vvs', '-x', '--pdb', '--pdb-failure',
'-s'], exit=False)
|