python-pebl-doc 1.0.2-2 / usr / share / doc / python-pebl / html / posterior.html

This file is indexed.

/usr/share/doc/python-pebl/html/posterior.html is in python-pebl-doc 1.0.2-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below. 

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">

<html xmlns="http://www.w3.org/1999/xhtml">
  <head>
    <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
    
    <title>posterior – Posterior distribution &mdash; Pebl v1.0.1 documentation</title>
    <link rel="stylesheet" href="_static/default.css" type="text/css" />
    <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
    <script type="text/javascript">
      var DOCUMENTATION_OPTIONS = {
        URL_ROOT:    '',
        VERSION:     '1.0.1',
        COLLAPSE_INDEX: false,
        FILE_SUFFIX: '.html',
        HAS_SOURCE:  true
      };
    </script>
    <script type="text/javascript" src="_static/jquery.js"></script>
    <script type="text/javascript" src="_static/underscore.js"></script>
    <script type="text/javascript" src="_static/doctools.js"></script>
    <link rel="top" title="Pebl v1.0.1 documentation" href="index.html" />
    <link rel="up" title="API Reference" href="apiref.html" />
    <link rel="next" title="prior – Prior models" href="prior.html" />
    <link rel="prev" title="network – Directed Acyclic Graphs" href="network.html" /> 
  </head>
  <body>
    <div class="related">
      <h3>Navigation</h3>
      <ul>
        <li class="right" style="margin-right: 10px">
          <a href="genindex.html" title="General Index"
             accesskey="I">index</a></li>
        <li class="right" >
          <a href="py-modindex.html" title="Python Module Index"
             >modules</a> |</li>
        <li class="right" >
          <a href="prior.html" title="prior – Prior models"
             accesskey="N">next</a> |</li>
        <li class="right" >
          <a href="network.html" title="network – Directed Acyclic Graphs"
             accesskey="P">previous</a> |</li>
        <li><a href="index.html">Pebl v1.0.1 documentation</a> &raquo;</li>
          <li><a href="apiref.html" accesskey="U">API Reference</a> &raquo;</li> 
      </ul>
    </div>  

    <div class="document">
      <div class="documentwrapper">
        <div class="bodywrapper">
          <div class="body">
            
  <div class="section" id="module-pebl.posterior">
<span id="posterior-posterior-distribution"></span><h1><tt class="xref py py-mod docutils literal"><span class="pre">posterior</span></tt> &#8211; Posterior distribution<a class="headerlink" href="#module-pebl.posterior" title="Permalink to this headline"></a></h1>
<p>This module provides a class for representing and working with posterior distribution.</p>
<dl class="class">
<dt id="pebl.posterior.Posterior">
<em class="property">class </em><tt class="descclassname">pebl.posterior.</tt><tt class="descname">Posterior</tt><big>(</big><em>nodes</em>, <em>adjacency_matrices</em>, <em>scores</em>, <em>sortedscores=False</em><big>)</big><a class="headerlink" href="#pebl.posterior.Posterior" title="Permalink to this definition"></a></dt>
<dd><p>Class for representing posterior distribution.</p>
<p>Except for trivial cases, we can only have an estimated posterior
distribution. It is usually constructed as a list of the top N networks
found during a search of the space of networks.</p>
<p>The pebl posterior object supports a list-like interface. So, given a
posterior object post, one can do the following:</p>
<blockquote>
<div><ul class="simple">
<li>Access the top-scoring network: post[0]</li>
<li>Access the top 10 networks as a new posterior object: post[0:10]</li>
<li>Calculate entropy of distribution: post.entropy</li>
<li>Iterate through networks: for net in post: print net.score</li>
</ul>
</div></blockquote>
<p>Note: a posterior object is immutable. That is, you cannot add and remove
networks once it is created. See result.Result for a mutable container for
networks.</p>
<p>Creates a posterior object.</p>
<p>adjacency_matrices and scores can be lists or numpy arrays.
If sorted is True, adjacency_matrices and scores should be sorted in
descending order of score.</p>
<dl class="method">
<dt id="pebl.posterior.Posterior.consensus_network">
<tt class="descname">consensus_network</tt><big>(</big><em>threshold=0.29999999999999999</em><big>)</big><a class="headerlink" href="#pebl.posterior.Posterior.consensus_network" title="Permalink to this definition"></a></dt>
<dd><p>Return a consensus network with the given threshold.</p>
</dd></dl>

<dl class="attribute">
<dt id="pebl.posterior.Posterior.entropy">
<tt class="descname">entropy</tt><a class="headerlink" href="#pebl.posterior.Posterior.entropy" title="Permalink to this definition"></a></dt>
<dd><p>The information entropy of the posterior distribution.</p>
</dd></dl>

</dd></dl>

</div>


          </div>
        </div>
      </div>
      <div class="sphinxsidebar">
        <div class="sphinxsidebarwrapper">
  <h4>Previous topic</h4>
  <p class="topless"><a href="network.html"
                        title="previous chapter"><tt class="docutils literal docutils literal docutils literal"><span class="pre">network</span></tt> &#8211; Directed Acyclic Graphs</a></p>
  <h4>Next topic</h4>
  <p class="topless"><a href="prior.html"
                        title="next chapter"><tt class="docutils literal"><span class="pre">prior</span></tt> &#8211; Prior models</a></p>
  <h3>This Page</h3>
  <ul class="this-page-menu">
    <li><a href="_sources/posterior.txt"
           rel="nofollow">Show Source</a></li>
  </ul>
<div id="searchbox" style="display: none">
  <h3>Quick search</h3>
    <form class="search" action="search.html" method="get">
      <input type="text" name="q" size="18" />
      <input type="submit" value="Go" />
      <input type="hidden" name="check_keywords" value="yes" />
      <input type="hidden" name="area" value="default" />
    </form>
    <p class="searchtip" style="font-size: 90%">
    Enter search terms or a module, class or function name.
    </p>
</div>
<script type="text/javascript">$('#searchbox').show(0);</script>
        </div>
      </div>
      <div class="clearer"></div>
    </div>
    <div class="related">
      <h3>Navigation</h3>
      <ul>
        <li class="right" style="margin-right: 10px">
          <a href="genindex.html" title="General Index"
             >index</a></li>
        <li class="right" >
          <a href="py-modindex.html" title="Python Module Index"
             >modules</a> |</li>
        <li class="right" >
          <a href="prior.html" title="prior – Prior models"
             >next</a> |</li>
        <li class="right" >
          <a href="network.html" title="network – Directed Acyclic Graphs"
             >previous</a> |</li>
        <li><a href="index.html">Pebl v1.0.1 documentation</a> &raquo;</li>
          <li><a href="apiref.html" >API Reference</a> &raquo;</li> 
      </ul>
    </div>
    <div class="footer">
        &copy; Copyright 2008, Abhik Shah.
      Last updated on Apr 29, 2011.
      Created using <a href="http://sphinx.pocoo.org/">Sphinx</a> 1.0.7.
    </div>
  </body>
</html>

APT Browse - Built by Thomas Orozco.